Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   GU333_RS07935 Genome accession   NZ_CP047630
Coordinates   1607370..1609166 (-) Length   598 a.a.
NCBI ID   WP_167842293.1    Uniprot ID   -
Organism   Lactococcus raffinolactis strain Lr_18_12S     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1602370..1614166
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GU333_RS07920 (GU333_07895) - 1604911..1605411 (-) 501 WP_061775233.1 LURP-one-related family protein -
  GU333_RS07925 (GU333_07900) - 1605654..1606568 (-) 915 WP_167842291.1 peptidyl-prolyl cis-trans isomerase -
  GU333_RS07930 (GU333_07905) - 1606673..1607377 (-) 705 WP_167842292.1 O-methyltransferase -
  GU333_RS07935 (GU333_07910) pepF 1607370..1609166 (-) 1797 WP_167842293.1 oligoendopeptidase F Regulator
  GU333_RS07940 (GU333_07915) mmuM 1609315..1610232 (-) 918 WP_096039406.1 homocysteine S-methyltransferase -
  GU333_RS07945 (GU333_07920) - 1610210..1611580 (-) 1371 WP_096040497.1 amino acid permease -
  GU333_RS07950 (GU333_07925) coiA 1611773..1612762 (-) 990 WP_061775229.1 competence protein CoiA family protein Machinery gene
  GU333_RS07955 (GU333_07930) - 1612839..1613804 (-) 966 WP_061775228.1 Gfo/Idh/MocA family oxidoreductase -

Sequence

Protein


Download         Length: 598 a.a.        Molecular weight: 68143.87 Da        Isoelectric Point: 4.4867

>NTDB_id=414741 GU333_RS07935 WP_167842293.1 1607370..1609166(-) (pepF) [Lactococcus raffinolactis strain Lr_18_12S]
MVKKREAIDEKYKWDLTTIFATDEAFEAELAEVLTALEDARNLAGTLTDSAENLLAVTDTELALMQRVEKLYVYASMKND
QDTTVSLYQEYQAKVTALYAKFSEVFAFYEPEFMTLSQERFAQFVIDQPKLQTYGHFFEQLFDRKAHVLSSAEEALLAGA
SEIFGAGAETFEILDNADIVFPTIRDAQGQDVQLSHGNYISFMESSNREVRKAAYQGLYSIYEQYQHTYAKTLQTNVKVH
NFTAKTRHYHSAREAALSTNHIPEAVYDTLVQAVNDHLPLLHRYIQLRSDILKIDDLKMYDVYAPLSTTDYKFTYEEAVV
KTQGTLAIFGPDYLEKVKRSFEENWIDVQENKGKRSGAYSGGSYDTNAFMLLNWQDTLDNLFTLVHEMGHSMHSSFTRES
QPYVYGDYSIFLAEIASTTNENILTETLLHDVEDDETRFAVLNHFLDGFRGTVFRQTQFAEFEHAIHEADAAGTVLTSEF
LNQQYAELNEKYYGLAASDNPEIQYEWARIPHFYYNYYVFQYATGFAAASALADKIVNGTEQDKADYLNYLRAGSSDYPL
DVIAKAGVDMTSADYLTAAFAVFEKRLTELEALVAKHG

Nucleotide


Download         Length: 1797 bp        

>NTDB_id=414741 GU333_RS07935 WP_167842293.1 1607370..1609166(-) (pepF) [Lactococcus raffinolactis strain Lr_18_12S]
ATGGTAAAAAAACGTGAAGCAATTGATGAAAAATATAAATGGGATCTGACGACAATTTTTGCAACAGATGAGGCTTTTGA
AGCGGAACTCGCAGAGGTTTTAACTGCACTAGAGGATGCTAGAAACTTAGCTGGTACCCTGACAGATTCTGCAGAAAATT
TATTAGCAGTGACTGATACGGAGTTGGCGCTCATGCAACGGGTAGAAAAGCTCTATGTCTATGCGTCAATGAAAAATGAC
CAGGATACAACGGTTAGTCTTTATCAAGAATATCAAGCAAAAGTAACAGCGCTCTATGCTAAATTTAGTGAAGTTTTTGC
TTTCTATGAACCTGAGTTTATGACTTTGTCGCAAGAAAGGTTTGCGCAGTTTGTCATTGATCAACCTAAATTACAAACTT
ATGGGCACTTCTTTGAGCAGTTGTTTGACAGAAAAGCTCATGTTTTGTCAAGCGCAGAAGAAGCCTTACTAGCTGGTGCG
TCAGAGATTTTCGGTGCAGGTGCTGAAACCTTTGAAATCTTAGATAATGCAGATATCGTCTTTCCAACGATTAGGGATGC
GCAAGGTCAAGACGTGCAGCTGTCACATGGTAACTATATTTCATTCATGGAATCATCGAATCGTGAGGTCAGAAAAGCAG
CCTATCAAGGACTCTATAGCATCTATGAACAATATCAGCATACCTATGCCAAGACGCTACAAACTAACGTCAAAGTCCAT
AACTTCACAGCTAAAACACGCCATTATCACTCAGCACGTGAAGCGGCTTTGTCCACTAACCACATCCCAGAAGCGGTTTA
TGACACTTTAGTTCAAGCGGTCAATGACCACCTGCCTCTGCTTCACCGTTATATCCAACTGCGCTCTGATATCCTGAAAA
TTGATGACCTAAAAATGTATGATGTCTATGCCCCTTTGTCAACGACAGATTATAAATTTACCTATGAAGAGGCAGTCGTT
AAAACTCAAGGCACACTTGCGATTTTCGGCCCAGATTATCTGGAAAAAGTTAAACGCAGCTTTGAAGAAAACTGGATTGA
TGTTCAGGAGAATAAAGGCAAGCGCTCAGGTGCCTATTCAGGTGGTTCATATGATACCAACGCCTTCATGCTTCTCAACT
GGCAGGATACGCTAGATAATCTCTTTACTTTGGTGCACGAGATGGGCCATAGCATGCACAGTAGCTTTACCCGCGAAAGC
CAGCCTTATGTCTACGGTGACTACAGCATCTTCCTCGCTGAAATAGCTTCGACAACTAATGAAAATATCCTCACAGAAAC
CTTGCTCCATGATGTTGAGGATGATGAGACGAGATTCGCGGTGCTCAACCACTTCTTGGATGGCTTTAGAGGCACTGTCT
TTAGACAAACGCAGTTTGCTGAGTTCGAGCATGCCATTCATGAGGCAGATGCTGCAGGAACCGTCTTAACCAGCGAGTTC
TTAAACCAACAATATGCCGAGTTAAATGAAAAATATTACGGCCTAGCTGCAAGTGATAACCCAGAAATCCAGTACGAATG
GGCTAGAATCCCACATTTCTACTACAATTACTATGTTTTCCAATATGCGACAGGTTTTGCAGCAGCATCTGCCTTGGCAG
ATAAAATCGTGAATGGAACTGAGCAAGATAAGGCAGACTATCTGAATTACTTGCGAGCTGGTTCGTCAGACTATCCGCTA
GATGTCATTGCCAAAGCGGGTGTTGATATGACGTCAGCTGATTATCTTACTGCTGCTTTTGCAGTTTTTGAAAAACGCTT
GACAGAATTAGAAGCATTGGTGGCGAAACATGGTTAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(202-581)

Oligopeptidase F (Peptidase_M3_N)

(112-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

65.94

99.666

0.657

Multiple sequence alignment