Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   GU334_RS09825 Genome accession   NZ_CP047628
Coordinates   2024451..2024960 (-) Length   169 a.a.
NCBI ID   WP_096039601.1    Uniprot ID   A0A290PXP2
Organism   Lactococcus raffinolactis strain Lr_19_14     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2019451..2029960
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GU334_RS09790 (GU334_09750) - 2019804..2020058 (-) 255 WP_061775372.1 DUF1912 family protein -
  GU334_RS09795 (GU334_09755) - 2020102..2020599 (-) 498 WP_167841557.1 GNAT family N-acetyltransferase -
  GU334_RS09800 (GU334_09760) rlmD 2020596..2021933 (-) 1338 WP_096039598.1 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD -
  GU334_RS09805 (GU334_09765) recX 2021970..2022764 (+) 795 WP_096039599.1 recombination regulator RecX -
  GU334_RS09810 (GU334_09770) - 2022791..2023504 (-) 714 WP_167840298.1 pseudouridine synthase -
  GU334_RS09815 (GU334_09775) - 2023670..2023981 (+) 312 WP_061775367.1 DUF960 domain-containing protein -
  GU334_RS09820 (GU334_09780) rpsR 2024157..2024402 (-) 246 WP_003140392.1 30S ribosomal protein S18 -
  GU334_RS09825 (GU334_09785) ssb 2024451..2024960 (-) 510 WP_096039601.1 single-stranded DNA-binding protein Machinery gene
  GU334_RS09830 (GU334_09790) rpsF 2024997..2025296 (-) 300 WP_061775365.1 30S ribosomal protein S6 -
  GU334_RS09835 (GU334_09795) - 2025492..2025803 (-) 312 WP_096039602.1 hypothetical protein -
  GU334_RS09840 (GU334_09800) - 2025945..2026289 (-) 345 WP_167372301.1 hypothetical protein -
  GU334_RS09845 (GU334_09805) - 2026300..2026953 (-) 654 WP_167841558.1 hypothetical protein -

Sequence

Protein


Download         Length: 169 a.a.        Molecular weight: 18385.25 Da        Isoelectric Point: 4.8895

>NTDB_id=414706 GU334_RS09825 WP_096039601.1 2024451..2024960(-) (ssb) [Lactococcus raffinolactis strain Lr_19_14]
MINNVVLVGRLTKDVELRYTPANQAVATFTLAVNRAFKNANGEREADFINVVIWRQAAENLANWAKKGALLGVTGRIQTR
NYENAQGQRVYVTEVVADNFQMLESRSAREGGQQGGGYTPSQSQPTNSNFGGNQPSQTQSSPAIPDFGRDSDPFSGGTPM
NLSDDDLPF

Nucleotide


Download         Length: 510 bp        

>NTDB_id=414706 GU334_RS09825 WP_096039601.1 2024451..2024960(-) (ssb) [Lactococcus raffinolactis strain Lr_19_14]
ATGATTAATAATGTTGTTTTAGTAGGTCGTTTGACCAAAGACGTTGAACTTCGTTACACACCTGCCAATCAAGCAGTGGC
TACTTTTACCCTTGCGGTTAATCGTGCCTTCAAAAATGCTAATGGTGAGCGTGAAGCAGATTTCATTAATGTTGTCATCT
GGCGTCAAGCTGCAGAAAATCTAGCAAATTGGGCGAAAAAAGGTGCGCTTCTGGGCGTTACTGGTCGTATCCAAACGCGT
AATTATGAGAATGCTCAAGGTCAACGTGTTTACGTGACTGAAGTGGTTGCTGATAATTTCCAAATGTTAGAAAGTCGTAG
CGCGCGCGAAGGTGGTCAACAAGGTGGTGGTTACACACCTTCACAGTCTCAACCTACAAACTCAAACTTCGGTGGCAATC
AACCGTCACAAACTCAGAGCTCACCTGCCATTCCAGACTTTGGCCGCGATAGCGATCCGTTTTCTGGTGGCACACCCATG
AACTTGAGTGATGATGATCTACCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A290PXP2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

59.429

100

0.615
  ssbA Bacillus subtilis subsp. subtilis str. 168

55.114

100

0.574
  ssbB Bacillus subtilis subsp. subtilis str. 168

60.377

62.722

0.379
  ssb Vibrio cholerae strain A1552

34.239

100

0.373
  ssb Glaesserella parasuis strain SC1401

32.632

100

0.367

Multiple sequence alignment