Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   GU336_RS08975 Genome accession   NZ_CP047616
Coordinates   1830309..1831298 (-) Length   329 a.a.
NCBI ID   WP_167838894.1    Uniprot ID   A0A6H0UHD3
Organism   Lactococcus raffinolactis strain Lr_19_5     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1825309..1836298
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GU336_RS08960 (GU336_08945) pepF 1825906..1827702 (-) 1797 WP_167838892.1 oligoendopeptidase F Regulator
  GU336_RS08965 (GU336_08950) mmuM 1827851..1828768 (-) 918 WP_167838893.1 homocysteine S-methyltransferase -
  GU336_RS08970 (GU336_08955) - 1828746..1830116 (-) 1371 WP_061775240.1 amino acid permease -
  GU336_RS08975 (GU336_08960) coiA 1830309..1831298 (-) 990 WP_167838894.1 competence protein CoiA family protein Machinery gene
  GU336_RS08980 (GU336_08965) - 1831375..1832340 (-) 966 WP_061775228.1 Gfo/Idh/MocA family oxidoreductase -
  GU336_RS08985 (GU336_08970) - 1832589..1833044 (-) 456 WP_167838895.1 hypothetical protein -
  GU336_RS08990 (GU336_08975) - 1833746..1834057 (-) 312 WP_167838896.1 hypothetical protein -
  GU336_RS08995 (GU336_08980) - 1834285..1834749 (-) 465 WP_167838897.1 hypothetical protein -

Sequence

Protein


Download         Length: 329 a.a.        Molecular weight: 38673.28 Da        Isoelectric Point: 7.1423

>NTDB_id=414657 GU336_RS08975 WP_167838894.1 1830309..1831298(-) (coiA) [Lactococcus raffinolactis strain Lr_19_5]
MLVAVNEAEQIINLLEFSKSDLTELVGQFLRCPACKSQVRLKNGHVKMPHFAHVNLAACQYYSENESLQHLTLKKRLYHW
FKQTEQVKIEHFLPELQQTPDLLVNETIAIEIQCSHLSIQRLRERTETYRAHGYTVLWLMGKDLWLGQHLTQLKQQLLYL
TQNAGFYYWELDLQREKIRLNYLCHEDLIGRLHYLQREFSFDVGNLLEVLRTPFAASSAKLTDQLSQDIPAFIRSQLYYQ
NPKWLKIQEKYYQNGQNLMTFKNFPIKLYPIGLNLLTHQFEGVVEPAFCQITSDISRYYHHFLAYPQDDGVYPPGFYARA
ETGDGDCKS

Nucleotide


Download         Length: 990 bp        

>NTDB_id=414657 GU336_RS08975 WP_167838894.1 1830309..1831298(-) (coiA) [Lactococcus raffinolactis strain Lr_19_5]
ATGCTAGTTGCAGTGAATGAAGCAGAACAAATCATCAATTTACTAGAATTTAGCAAGTCGGACCTTACTGAATTGGTAGG
TCAATTTTTGCGTTGTCCTGCTTGCAAAAGTCAGGTACGCTTGAAAAATGGTCATGTAAAAATGCCCCATTTTGCTCACG
TAAATTTAGCAGCCTGTCAATATTATTCGGAGAACGAAAGCCTGCAGCACTTAACCTTAAAAAAACGTTTATATCACTGG
TTCAAGCAAACAGAGCAGGTCAAAATCGAGCATTTTTTACCTGAGTTACAGCAGACGCCTGACTTACTGGTTAATGAAAC
GATTGCGATTGAAATTCAATGCAGTCACCTGTCTATTCAGAGACTGCGTGAGCGGACAGAAACCTATCGAGCTCATGGCT
ACACCGTCCTCTGGCTCATGGGAAAGGATTTATGGTTGGGTCAGCATTTGACGCAACTCAAGCAACAGTTACTCTATTTA
ACCCAGAATGCTGGTTTTTACTATTGGGAGTTGGATTTGCAGCGTGAAAAAATCCGCCTCAACTATCTGTGCCATGAAGA
TTTAATAGGGCGTTTGCATTATTTACAGCGTGAATTTTCCTTCGATGTAGGGAATTTACTTGAGGTGCTTCGAACGCCAT
TTGCGGCAAGCTCAGCCAAATTGACTGACCAGTTATCGCAAGATATTCCAGCATTTATCAGGTCTCAGCTTTATTATCAG
AATCCCAAATGGTTGAAAATTCAAGAAAAGTATTATCAGAATGGGCAAAATTTGATGACGTTCAAAAACTTCCCTATTAA
GTTATATCCGATTGGCTTGAATCTCTTAACGCACCAGTTCGAAGGCGTTGTCGAGCCTGCCTTTTGTCAAATTACAAGCG
ATATCAGTCGATATTATCACCATTTTCTGGCTTATCCGCAGGATGATGGGGTTTATCCGCCGGGATTTTATGCTAGGGCT
GAGACAGGTGATGGAGATTGTAAAAGCTGA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(1-273)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6H0UHD3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Lactococcus lactis subsp. cremoris KW2

52.174

97.872

0.511
  coiA Streptococcus mitis NCTC 12261

44.753

98.48

0.441
  coiA Streptococcus pneumoniae TIGR4

42.901

98.48

0.422
  coiA Streptococcus pneumoniae Rx1

42.901

98.48

0.422
  coiA Streptococcus pneumoniae D39

42.901

98.48

0.422
  coiA Streptococcus pneumoniae R6

42.901

98.48

0.422

Multiple sequence alignment