Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   GU336_RS08960 Genome accession   NZ_CP047616
Coordinates   1825906..1827702 (-) Length   598 a.a.
NCBI ID   WP_167838892.1    Uniprot ID   A0A6H0UIT0
Organism   Lactococcus raffinolactis strain Lr_19_5     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1820906..1832702
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GU336_RS08945 (GU336_08930) - 1823447..1823947 (-) 501 WP_061775233.1 LURP-one-related family protein -
  GU336_RS08950 (GU336_08935) - 1824190..1825158 (-) 969 WP_245334335.1 peptidyl-prolyl cis-trans isomerase -
  GU336_RS08955 (GU336_08940) - 1825209..1825913 (-) 705 WP_096039404.1 O-methyltransferase -
  GU336_RS08960 (GU336_08945) pepF 1825906..1827702 (-) 1797 WP_167838892.1 oligoendopeptidase F Regulator
  GU336_RS08965 (GU336_08950) mmuM 1827851..1828768 (-) 918 WP_167838893.1 homocysteine S-methyltransferase -
  GU336_RS08970 (GU336_08955) - 1828746..1830116 (-) 1371 WP_061775240.1 amino acid permease -
  GU336_RS08975 (GU336_08960) coiA 1830309..1831298 (-) 990 WP_167838894.1 competence protein CoiA family protein Machinery gene
  GU336_RS08980 (GU336_08965) - 1831375..1832340 (-) 966 WP_061775228.1 Gfo/Idh/MocA family oxidoreductase -

Sequence

Protein


Download         Length: 598 a.a.        Molecular weight: 68108.82 Da        Isoelectric Point: 4.4867

>NTDB_id=414656 GU336_RS08960 WP_167838892.1 1825906..1827702(-) (pepF) [Lactococcus raffinolactis strain Lr_19_5]
MVKKREAIDEKYKWDLTTIFATDEAFEAELAEVLTALEDARNLAGTLTDSAENLLAVTDTELALMQRVEKLYVYASMKND
QDTTVSLYQEYQAKVTALYAKFSEVFAFYEPEFMTLSQERFAQFVIDQPKLQTYGHFFEQLFDRKAHVLSSAEEALLAGA
SEIFGAGAETFEILDNADIVFPTIRDAQGQDVQLSHGNYISFMESSNREVRKAAYQALYSIYEQYQHTYAKTLQTNVKVH
NFTAKTRHYHSAREAALSTNHIPEAVYDTLVQAVNDHLPLLHRYIQLRSDILKIDDLKMYDVYAPLSTTDYKFTYEEAVV
KTQGTLAIFGPDYLEKVKRSFEENWIDVQENKGKRSGAYSGGSYDTNAFMLLNWQDTLDNLFTLVHEMGHSMHSSFTRES
QPYVYGDYSIFLAEIASTTNENILTETLLHDVEDDETRFAVLNHFLDGFRGTVFRQTQFAEFEHAIHEADAAGTVLTSEF
LNQQYAELNEKNYGLAASDNPEIQYEWARIPHFYYNYYVFQYATGFAAASALADKIVNGTEQDKADYLNYLRAGSSDYPL
DVIAKAGVDMTSADYLTAAFAVFEKRLTELEALVAKHG

Nucleotide


Download         Length: 1797 bp        

>NTDB_id=414656 GU336_RS08960 WP_167838892.1 1825906..1827702(-) (pepF) [Lactococcus raffinolactis strain Lr_19_5]
ATGGTAAAAAAACGTGAAGCAATTGATGAAAAATATAAATGGGATCTGACGACAATTTTTGCAACAGATGAGGCTTTTGA
AGCGGAACTCGCAGAGGTTTTAACTGCACTAGAGGATGCTAGAAACTTAGCTGGTACCCTGACAGATTCTGCAGAAAATT
TATTAGCAGTGACTGATACGGAGTTGGCGCTCATGCAACGGGTAGAAAAGCTCTATGTCTATGCGTCAATGAAAAATGAC
CAGGATACAACGGTTAGTCTTTATCAAGAATATCAAGCAAAAGTAACAGCGCTCTATGCTAAATTTAGTGAAGTTTTTGC
TTTCTATGAACCTGAGTTTATGACTTTGTCGCAAGAAAGGTTTGCGCAGTTTGTCATTGATCAACCTAAATTACAAACTT
ATGGGCACTTCTTTGAGCAGTTGTTTGACAGAAAAGCTCATGTTTTGTCAAGCGCAGAAGAAGCCTTACTAGCTGGTGCG
TCAGAGATTTTCGGTGCAGGTGCTGAAACCTTTGAAATCTTAGATAATGCAGATATCGTCTTTCCAACGATTAGGGATGC
GCAAGGTCAAGACGTGCAGCTGTCACATGGTAACTATATTTCATTCATGGAATCATCGAATCGTGAGGTCAGAAAAGCAG
CCTATCAAGCACTCTATAGCATCTATGAACAATATCAGCATACCTATGCCAAGACGCTACAAACTAACGTCAAAGTCCAT
AACTTCACAGCTAAAACACGCCATTATCACTCAGCACGTGAAGCGGCTTTGTCCACTAACCACATCCCAGAAGCGGTTTA
TGACACTTTAGTTCAAGCGGTCAATGACCACCTGCCTCTGCTTCACCGTTATATCCAACTGCGCTCTGATATCCTGAAAA
TTGATGACCTAAAAATGTATGATGTCTATGCCCCTTTGTCAACGACAGATTATAAATTTACCTATGAAGAGGCAGTCGTT
AAAACTCAAGGCACACTTGCGATTTTCGGCCCAGATTATCTGGAAAAAGTTAAACGCAGCTTTGAAGAAAACTGGATTGA
TGTTCAGGAGAATAAAGGCAAGCGCTCAGGTGCCTATTCAGGTGGTTCATATGATACCAACGCCTTCATGCTTCTCAACT
GGCAGGATACGCTAGATAATCTCTTTACTTTGGTGCACGAGATGGGCCATAGCATGCACAGTAGCTTTACCCGCGAAAGC
CAGCCTTATGTCTACGGTGACTACAGCATCTTCCTCGCTGAAATAGCTTCGACAACTAATGAAAATATCCTCACAGAAAC
CTTGCTCCATGATGTTGAGGATGATGAGACGAGATTCGCGGTGCTCAACCACTTCTTGGATGGCTTTAGAGGCACTGTCT
TTAGACAAACGCAGTTTGCTGAGTTCGAGCATGCCATTCATGAGGCAGATGCTGCAGGAACCGTCTTAACCAGCGAGTTC
TTAAACCAACAATATGCCGAGTTAAATGAAAAAAATTACGGCCTAGCTGCAAGTGATAACCCAGAAATCCAGTACGAATG
GGCTAGAATCCCACATTTCTACTACAATTACTATGTTTTCCAATATGCGACAGGTTTTGCAGCAGCATCTGCCTTGGCAG
ATAAAATCGTGAATGGAACTGAGCAAGATAAGGCAGACTATCTGAATTACTTGCGAGCTGGTTCGTCAGACTATCCGCTA
GATGTCATTGCCAAAGCGGGTGTTGATATGACGTCAGCTGATTATCTTACTGCTGCTTTTGCAGTTTTTGAAAAACGCTT
GACAGAATTAGAAGCATTGGTGGCGAAACATGGTTAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(112-181)

Peptidase family M3 (Peptidase_M3)

(202-581)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6H0UIT0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

65.94

99.666

0.657

Multiple sequence alignment