Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   GUC46_RS23640 Genome accession   NZ_CP047606
Coordinates   4975022..4976542 (+) Length   506 a.a.
NCBI ID   WP_160180761.1    Uniprot ID   -
Organism   Citrobacter sp. LUTT5     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4970022..4981542
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GUC46_RS23620 (GUC46_23620) - 4971578..4972507 (-) 930 WP_003018014.1 branched-chain amino acid transaminase -
  GUC46_RS23625 (GUC46_23625) ilvM 4972525..4972788 (-) 264 WP_003018017.1 acetolactate synthase 2 small subunit -
  GUC46_RS23630 (GUC46_23630) ilvG 4972785..4974431 (-) 1647 WP_003841174.1 acetolactate synthase 2 catalytic subunit -
  GUC46_RS23635 (GUC46_23635) ilvL 4974571..4974669 (-) 99 WP_001311244.1 ilv operon leader peptide -
  GUC46_RS23640 (GUC46_23640) comM 4975022..4976542 (+) 1521 WP_160180761.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  GUC46_RS23645 (GUC46_23645) maoP 4976567..4976905 (-) 339 WP_003018025.1 macrodomain Ori organization protein MaoP -
  GUC46_RS23650 (GUC46_23650) hdfR 4977012..4977857 (+) 846 WP_085952510.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 55068.09 Da        Isoelectric Point: 7.2663

>NTDB_id=414574 GUC46_RS23640 WP_160180761.1 4975022..4976542(+) (comM) [Citrobacter sp. LUTT5]
MSLSIVHTRAALGVNAPAITIEVHISNGLPGLTMVGLPETTVKEARDRVRSAVINSGYEFPAKKITINLAPADLPKEGGR
YDLPIAVALLAASEQLTTHNLDTYELVGELALTGALRGVPGAISSATEAIRAGRKIIVAKENAAEVGLIQGEGCLIADHL
QAVCAFLEGKHDLDKPSSADFIPCALADDLSDVIGQEQGKRGLELTAAGGHNLILIGPPGTGKTMLASRLRGLLPPLSND
EALESAAILSLVNSDTLQKQWKQRPFRSPHHSASLTAMVGGGSIPAPGEISLAHNGILFLDELPEFERRTLDALREPIES
GQIHLSRTRAKITYPARFQLIAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLDRFDLSLEIPLPPPGILSQNQVKG
EDSAMVKQRVMAARDRQYRRQNKLNAHLDSQDIHKYCPLRSDDAQWLEETLAHLGLSIRAWLRLIKVARTIADIEQSDHI
SRQHLQEAVGYRAIDRLLIHLQKLLA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=414574 GUC46_RS23640 WP_160180761.1 4975022..4976542(+) (comM) [Citrobacter sp. LUTT5]
ATGTCACTATCGATTGTTCACACACGCGCTGCGCTGGGCGTGAATGCGCCAGCCATTACCATCGAGGTACATATCAGCAA
TGGTTTGCCTGGTTTAACCATGGTGGGATTACCCGAAACAACGGTAAAAGAGGCCCGCGATCGGGTTCGCAGTGCGGTAA
TTAATAGCGGTTATGAATTCCCGGCAAAGAAGATAACCATAAACCTCGCTCCGGCCGATCTCCCAAAAGAAGGGGGACGA
TATGATTTACCTATCGCAGTTGCGCTTCTGGCCGCTTCTGAGCAGCTTACTACCCATAATCTCGATACATATGAGCTGGT
AGGTGAATTAGCGCTTACAGGCGCGTTACGCGGCGTTCCCGGTGCGATATCAAGTGCAACCGAAGCCATTCGCGCAGGCA
GGAAAATTATTGTCGCAAAAGAGAATGCAGCTGAAGTTGGACTAATACAGGGTGAAGGGTGCCTGATAGCCGATCATCTA
CAGGCAGTATGCGCATTCCTCGAAGGTAAGCATGATTTAGACAAACCATCATCAGCAGATTTTATCCCCTGCGCATTAGC
AGATGATCTGAGCGATGTTATCGGCCAGGAACAGGGTAAACGCGGGCTGGAGCTTACCGCAGCTGGCGGTCATAACCTCA
TACTCATCGGCCCTCCGGGTACGGGTAAGACTATGCTGGCCAGTCGCCTGAGAGGATTGCTTCCGCCACTGAGTAACGAT
GAGGCACTGGAAAGCGCCGCGATTCTTAGTCTGGTCAATTCCGACACGCTACAGAAACAGTGGAAACAACGCCCTTTTCG
CTCTCCGCATCATAGTGCTTCATTAACCGCCATGGTCGGTGGAGGCTCTATTCCTGCGCCAGGCGAGATCTCTCTGGCGC
ATAACGGCATACTATTTCTGGATGAACTACCCGAGTTTGAGCGGCGCACACTGGATGCACTGCGCGAACCCATTGAGTCC
GGACAGATACATCTATCCCGCACCAGAGCAAAAATCACCTATCCCGCTCGCTTTCAACTCATAGCCGCCATGAATCCCAG
CCCAACAGGCCATTATCAGGGGAACCATAACCGCTGCACCCCAGAGCAGACGCTACGCTACCTCAATCGATTATCAGGTC
CATTTCTTGACCGCTTCGATCTCTCTCTCGAAATCCCTTTGCCACCGCCCGGGATACTCAGTCAGAACCAGGTAAAAGGG
GAAGATAGCGCAATGGTGAAGCAACGTGTTATGGCAGCGCGAGATCGTCAGTATCGACGACAAAATAAGTTAAACGCGCA
TCTGGACAGTCAGGATATCCATAAATACTGTCCACTGCGCAGTGATGATGCACAGTGGCTTGAAGAAACGCTCGCGCATC
TCGGATTATCCATCCGCGCCTGGTTACGCCTGATAAAGGTTGCTCGAACGATCGCGGATATAGAACAATCTGACCATATC
TCTCGCCAGCACTTACAGGAGGCTGTTGGGTATCGGGCGATAGACAGATTACTCATTCATTTGCAAAAACTACTGGCATA
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

58.135

99.605

0.579
  comM Glaesserella parasuis strain SC1401

57.677

100

0.579
  comM Vibrio cholerae strain A1552

58.167

99.209

0.577
  comM Haemophilus influenzae Rd KW20

56.751

100

0.573
  comM Legionella pneumophila str. Paris

46.881

98.221

0.46
  comM Legionella pneumophila strain ERS1305867

46.881

98.221

0.46
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.604

100

0.427

Multiple sequence alignment