Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   GTQ93_RS19190 Genome accession   NZ_CP047570
Coordinates   4028237..4028767 (-) Length   176 a.a.
NCBI ID   WP_063135425.1    Uniprot ID   -
Organism   Enterobacter hormaechei strain F2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4023237..4033767
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GTQ93_RS19165 (GTQ93_19165) soxR 4023330..4023788 (-) 459 WP_003860275.1 redox-sensitive transcriptional activator SoxR -
  GTQ93_RS19170 (GTQ93_19170) soxS 4023887..4024213 (+) 327 WP_003860277.1 superoxide response transcriptional regulator SoxS -
  GTQ93_RS19175 (GTQ93_19175) - 4024220..4025785 (-) 1566 WP_015570189.1 EAL domain-containing protein -
  GTQ93_RS19180 (GTQ93_19180) - 4026051..4027451 (-) 1401 WP_063135426.1 sensor domain-containing diguanylate cyclase -
  GTQ93_RS19185 (GTQ93_19185) - 4027895..4028176 (+) 282 WP_003860282.1 YjcB family protein -
  GTQ93_RS19190 (GTQ93_19190) ssb 4028237..4028767 (-) 531 WP_063135425.1 single-stranded DNA-binding protein SSB1 Machinery gene
  GTQ93_RS19195 (GTQ93_19195) uvrA 4029019..4031841 (+) 2823 WP_015570187.1 excinuclease ABC subunit UvrA -
  GTQ93_RS19200 (GTQ93_19200) - 4031845..4032198 (-) 354 WP_017382628.1 MmcQ/YjbR family DNA-binding protein -
  GTQ93_RS19205 (GTQ93_19205) - 4032201..4032617 (-) 417 WP_017382627.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  GTQ93_RS19210 (GTQ93_19210) aphA 4032730..4033443 (-) 714 WP_017382626.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 18863.89 Da        Isoelectric Point: 5.2456

>NTDB_id=414243 GTQ93_RS19190 WP_063135425.1 4028237..4028767(-) (ssb) [Enterobacter hormaechei strain F2]
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQSGAEKYTTEVVVNVGGTMQMLGGRQGGGAPVGGGQNQQQGGWGQPQQPQGGNQFSGGAQSRPQQQSAP
APSNEPPMDFDDDIPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=414243 GTQ93_RS19190 WP_063135425.1 4028237..4028767(-) (ssb) [Enterobacter hormaechei strain F2]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTACATGCCGAGTGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGAGAAATGAAAGAGCAGACCG
AATGGCACCGCGTTGTGCTGTTTGGCAAACTGGCCGAAGTGGCCGGTGAGTATCTGCGTAAAGGTTCTCAGGTCTATATC
GAAGGCCAGCTGCGTACCCGCAAATGGACCGACCAATCCGGCGCTGAGAAGTACACCACGGAAGTGGTGGTGAACGTGGG
CGGCACCATGCAAATGCTGGGTGGCCGTCAGGGCGGTGGCGCACCGGTAGGTGGCGGTCAGAATCAGCAGCAGGGTGGTT
GGGGTCAGCCTCAGCAGCCTCAGGGCGGCAACCAGTTCAGCGGCGGCGCGCAGTCCCGTCCGCAGCAGCAGTCTGCTCCG
GCACCGTCTAACGAACCGCCAATGGATTTCGACGACGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

76.111

100

0.778
  ssb Glaesserella parasuis strain SC1401

56.757

100

0.597
  ssb Neisseria meningitidis MC58

46.629

100

0.472
  ssb Neisseria gonorrhoeae MS11

46.629

100

0.472
  ssbA Bacillus subtilis subsp. subtilis str. 168

35.556

100

0.364

Multiple sequence alignment