Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   GRX76_RS17825 Genome accession   NZ_CP047569
Coordinates   4311724..4312302 (-) Length   192 a.a.
NCBI ID   WP_160154527.1    Uniprot ID   -
Organism   Microbulbifer sp. ALW1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4306724..4317302
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GRX76_RS17805 galU 4307866..4308702 (-) 837 WP_160154524.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  GRX76_RS17810 fabA 4308965..4309489 (+) 525 WP_105103213.1 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabA -
  GRX76_RS17815 fabB 4309566..4310789 (+) 1224 WP_160154525.1 beta-ketoacyl-ACP synthase I -
  GRX76_RS17820 - 4310870..4311706 (-) 837 WP_160154526.1 sugar nucleotide-binding protein -
  GRX76_RS17825 ssb 4311724..4312302 (-) 579 WP_160154527.1 single-stranded DNA-binding protein Machinery gene
  GRX76_RS17830 - 4312538..4313710 (-) 1173 WP_160154528.1 MFS transporter -
  GRX76_RS17835 - 4313837..4315240 (-) 1404 WP_201276857.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 20798.64 Da        Isoelectric Point: 5.2957

>NTDB_id=414227 GRX76_RS17825 WP_160154527.1 4311724..4312302(-) (ssb) [Microbulbifer sp. ALW1]
MARGVNKVILIGNLGGDPETRYLPSGGAVTNVTLATSETWKDKQTGQNQERTEWHRVVFFNRLAEIAGEYLRKGSKVYLE
GSLRTRKWQDKQSGQDRYTTEIVASEMQMLDGRGEQGGGGYQQGGQGGYSQQGQQGQQGGGFNQGGGYQDEFSQGRSTPS
PMAPSQQPANKPAGNQPPAGGFDNSFDDDIPF

Nucleotide


Download         Length: 579 bp        

>NTDB_id=414227 GRX76_RS17825 WP_160154527.1 4311724..4312302(-) (ssb) [Microbulbifer sp. ALW1]
ATGGCCAGGGGCGTAAACAAAGTAATTCTGATTGGTAACCTGGGCGGCGACCCGGAAACCCGCTACCTCCCCAGTGGCGG
TGCAGTCACCAATGTAACCCTGGCGACTTCTGAAACCTGGAAAGACAAGCAGACGGGCCAGAACCAAGAGCGCACCGAAT
GGCACCGCGTGGTGTTCTTCAACCGTCTGGCTGAAATCGCCGGTGAATACCTGCGCAAAGGCAGCAAGGTATACCTGGAA
GGCTCACTGCGTACCCGCAAGTGGCAGGACAAGCAGTCCGGACAGGACCGCTACACCACCGAAATCGTCGCCAGCGAAAT
GCAGATGCTGGATGGCCGCGGTGAACAGGGTGGCGGCGGCTACCAGCAGGGCGGCCAGGGTGGCTACTCCCAGCAAGGCC
AGCAAGGTCAGCAGGGTGGTGGTTTTAACCAGGGCGGCGGCTACCAGGACGAGTTTTCCCAGGGCCGTTCCACACCATCT
CCGATGGCGCCGTCCCAGCAGCCGGCCAACAAGCCAGCGGGCAATCAGCCGCCGGCCGGTGGTTTCGATAACAGCTTCGA
CGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-110)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

54.872

100

0.557
  ssb Glaesserella parasuis strain SC1401

55.026

98.438

0.542
  ssb Neisseria gonorrhoeae MS11

47.179

100

0.479
  ssb Neisseria meningitidis MC58

46.392

100

0.469

Multiple sequence alignment