Detailed information NTG0414211

Bioinformatically predicted

Overview

• Name: comM
• Type: Machinery gene
• Locus tag: GRX76_RS01905
• Genome accession: NZ_CP047569
• Coordinates: 481958..483448 (+)
• Length: 496 a.a.
• NCBI ID: WP_160151749.1
• Uniprot ID: -
• Organism: Microbulbifer sp. ALW1
• Function: ssDNA binding (predicted from homology) DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
ICE	472190..492462	481958..483448	within	0

Gene organization within MGE regions

Location: 472190..492462

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GRX76_RS01845	cyaY	472907..473239 (-)	333	WP_160151739.1	iron donor protein CyaY	-
GRX76_RS01850	-	473339..473590 (+)	252	WP_160151740.1	lipoprotein	-
GRX76_RS01855	lysA	473587..474840 (+)	1254	WP_160151741.1	diaminopimelate decarboxylase	-
GRX76_RS01860	dapF	474855..475685 (+)	831	WP_160151742.1	diaminopimelate epimerase	-
GRX76_RS01865	-	475764..476525 (+)	762	WP_160151743.1	DUF484 family protein	-
GRX76_RS01870	xerC	476538..477458 (+)	921	WP_305075902.1	tyrosine recombinase XerC	-
GRX76_RS01875	-	477644..477856 (-)	213	WP_160151745.1	hypothetical protein	-
GRX76_RS01880	-	478283..478621 (-)	339	WP_043319767.1	P-II family nitrogen regulator	-
GRX76_RS01885	-	478745..480004 (-)	1260	WP_160151746.1	ammonium transporter	-
GRX76_RS01890	-	480096..480434 (-)	339	WP_160151747.1	P-II family nitrogen regulator	-
GRX76_RS01895	-	480492..481220 (-)	729	WP_255461847.1	TorF family putative porin	-
GRX76_RS01900	-	481570..481878 (+)	309	WP_236250511.1	accessory factor UbiK family protein	-
GRX76_RS01905	comM	481958..483448 (+)	1491	WP_160151749.1	YifB family Mg chelatase-like AAA ATPase	Machinery gene
GRX76_RS01910	-	483435..483998 (-)	564	WP_160151750.1	GNAT family N-acetyltransferase	-
GRX76_RS01915	bla	484002..484871 (-)	870	WP_201276955.1	subclass B3 metallo-beta-lactamase	-
GRX76_RS01920	-	484879..485382 (-)	504	WP_160151752.1	N-acetyltransferase	-
GRX76_RS01925	-	485402..485863 (-)	462	WP_160151753.1	YaiI/YqxD family protein	-
GRX76_RS01930	-	485863..486084 (-)	222	WP_160151754.1	DUF3565 domain-containing protein	-
GRX76_RS01935	-	486143..487579 (-)	1437	WP_160151755.1	hypothetical protein	-
GRX76_RS01940	-	487697..488566 (-)	870	WP_160151756.1	helix-turn-helix domain-containing protein	-
GRX76_RS01945	rep	488737..490770 (+)	2034	WP_160151757.1	DNA helicase Rep	-
GRX76_RS01950	-	490849..491268 (-)	420	WP_160151758.1	cytochrome c5 family protein	-

Sequence

Protein

• Length: 496 a.a.
• Molecular weight: 53210.75 Da
• Isoelectric Point: 7.8996

>NTDB_id=414211 GRX76_RS01905 WP_160151749.1 481958..483448(+) (comM) [Microbulbifer sp. ALW1]
MSLSITYARAQLGIQAPLVTVETHLANGLPAFNIVGLPEAAVRESRDRVRSAIVNSHFEFPQRRITVNLAPADLPKAGGR
YDLAIALGILAASGQVPGDALGHYEFIGELALSGSLRPIPGALPAAIACRDSGRTLVTAIESSAEAALIDTPVKSATSLL
QVCAQLHGREPLPDAQQSTEQETVVCADLADVRGQLKARRALEVAAGGNHNLLFYGPPGTGKTMLASRLPGILPPLTEKE
LVEVAALYSSAGLSRIRQRPFRAPHHSASPTALVGGGSNPRPGEISLAHRGVLFLDEMPEFPRSALEILREPLENGEVRI
SRARAQVTFPANFQLVAAMNPCPCGYLGETRCRCTPDQIDRYRNKLSGPLLDRIDMQVEVSSMSASQLQDSPPGESSDTV
RERVVRAREIQLQRQGKINGDLQGSELDAFCRLGNQEAALLRASVEKLGLSARSYHRVLKVARTLADLSGQEHIGTAQIA
EALAYRNLDRKSVMPA

Nucleotide

• Length: 1491 bp

>NTDB_id=414211 GRX76_RS01905 WP_160151749.1 481958..483448(+) (comM) [Microbulbifer sp. ALW1]
ATGAGCCTATCCATTACCTACGCCCGTGCCCAGCTGGGCATACAGGCACCCCTGGTGACCGTGGAAACCCACCTCGCCAA
TGGATTGCCCGCATTCAATATTGTCGGCTTGCCAGAGGCCGCGGTGCGCGAGAGTCGCGACCGGGTGCGCAGCGCCATCG
TCAACAGCCACTTCGAGTTCCCCCAGCGGCGCATTACCGTGAATCTTGCTCCCGCCGACCTGCCCAAGGCCGGCGGGCGC
TACGATCTCGCCATCGCCCTCGGCATCCTCGCCGCTTCCGGGCAGGTGCCGGGAGATGCCCTGGGGCACTACGAGTTTAT
CGGTGAGCTGGCGCTATCCGGCAGCCTGCGCCCGATTCCCGGCGCCCTGCCCGCCGCCATCGCCTGTCGCGACAGCGGCC
GCACCCTGGTTACTGCCATTGAATCCAGCGCCGAGGCCGCGCTGATCGATACCCCGGTGAAATCCGCCACTTCACTGCTG
CAGGTGTGCGCACAACTGCACGGTCGCGAACCCCTGCCGGATGCCCAGCAATCGACCGAGCAGGAAACGGTGGTGTGCGC
GGATCTGGCCGACGTGCGCGGGCAGCTGAAGGCCCGCCGTGCACTCGAGGTGGCCGCCGGTGGAAACCACAATCTTTTGT
TTTACGGGCCACCGGGTACCGGCAAAACCATGCTCGCCAGCCGGCTGCCCGGCATACTGCCGCCGCTGACCGAGAAAGAG
CTGGTGGAAGTGGCCGCACTCTATTCCAGCGCCGGTCTCTCGCGTATCCGCCAGCGCCCCTTTCGCGCCCCGCACCACTC
CGCCTCCCCCACCGCGCTCGTCGGCGGCGGCAGTAATCCGCGTCCCGGGGAAATCAGCCTGGCCCACCGCGGCGTGCTGT
TTCTGGATGAAATGCCGGAGTTCCCGCGCTCGGCGCTGGAGATACTCCGCGAGCCGCTGGAAAACGGTGAGGTGCGCATT
TCCCGCGCCCGTGCCCAGGTCACCTTCCCGGCTAACTTTCAACTGGTTGCCGCCATGAACCCCTGTCCCTGTGGCTACCT
GGGAGAAACCCGCTGCCGCTGCACTCCGGACCAGATTGATCGCTACCGCAACAAGCTCTCCGGGCCGCTGCTGGATCGCA
TCGACATGCAGGTGGAGGTGTCCAGCATGAGTGCCAGCCAGCTGCAGGATTCACCGCCGGGGGAAAGCTCCGACACGGTG
CGCGAACGGGTAGTTCGCGCGCGGGAAATCCAGTTGCAGCGACAGGGAAAAATCAACGGCGACTTGCAGGGTAGCGAGCT
GGACGCGTTCTGCCGCCTGGGTAATCAGGAAGCGGCGCTACTGCGCGCCTCGGTGGAAAAGCTCGGCTTGTCTGCGCGCA
GTTACCACCGGGTATTGAAAGTGGCGCGCACACTGGCGGATTTGAGTGGACAGGAACACATCGGCACGGCACAGATTGCC
GAGGCGCTGGCCTATCGCAATCTGGATCGCAAAAGCGTCATGCCGGCGTAG

Domains

Predicted by InterproScan.

• Magnesium chelatase, subunit ChlI (Mg_chelatase) (188-387)

• Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C) (394-486)

• Subunit ChlI of Mg-chelatase (ChlI) (21-137)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comM	Vibrio cholerae strain A1552	55.131	100	0.552
comM	Vibrio campbellii strain DS40M4	54.527	100	0.546
comM	Haemophilus influenzae Rd KW20	53.493	100	0.54
comM	Glaesserella parasuis strain SC1401	51.896	100	0.524
comM	Legionella pneumophila str. Paris	50.1	100	0.506
comM	Legionella pneumophila strain ERS1305867	50.1	100	0.506
RA0C_RS07335	Riemerella anatipestifer ATCC 11845 = DSM 15868	46.215	100	0.468