Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   GT391_RS08490 Genome accession   NZ_CP047495
Coordinates   1900836..1902362 (-) Length   508 a.a.
NCBI ID   WP_010283920.1    Uniprot ID   -
Organism   Pectobacterium brasiliense strain 1692     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 1895836..1907362
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GT391_RS08465 (GT391_08465) ytfR 1895991..1897511 (+) 1521 WP_010283930.1 galactofuranose ABC transporter, ATP-binding protein YtfR -
  GT391_RS08470 (GT391_08470) ytfT 1897498..1898508 (+) 1011 WP_010283927.1 galactofuranose ABC transporter, ATP-binding protein YtfT -
  GT391_RS08475 (GT391_08475) yjfF 1898508..1899470 (+) 963 WP_010283925.1 galactofuranose ABC transporter, permease protein YjfF -
  GT391_RS08480 (GT391_08480) hdfR 1899492..1900319 (-) 828 WP_010283922.1 HTH-type transcriptional regulator HdfR -
  GT391_RS08485 (GT391_08485) - 1900440..1900778 (+) 339 WP_010283921.1 DUF413 domain-containing protein -
  GT391_RS08490 (GT391_08490) comM 1900836..1902362 (-) 1527 WP_010283920.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  GT391_RS08495 (GT391_08495) ilvL 1902770..1902868 (+) 99 WP_071531109.1 ilv operon leader peptide -
  GT391_RS08500 (GT391_08500) ilvG 1903009..1904655 (+) 1647 WP_010283919.1 acetolactate synthase 2 catalytic subunit -
  GT391_RS08505 (GT391_08505) ilvM 1904734..1904994 (+) 261 WP_005969103.1 acetolactate synthase 2 small subunit -
  GT391_RS08510 (GT391_08510) - 1905020..1905946 (+) 927 WP_010283915.1 branched-chain amino acid transaminase -

Sequence

Protein


Download         Length: 508 a.a.        Molecular weight: 55461.19 Da        Isoelectric Point: 6.9218

>NTDB_id=413860 GT391_RS08490 WP_010283920.1 1900836..1902362(-) (comM) [Pectobacterium brasiliense strain 1692]
MSLAVTYTRAMIGVQAPDVYIEVHISSGLPALTLVGLPETTVKEARDRVRSALINCGFTFPAKRITVNLAPADLPKEGGR
YDLPIALAILAASEQIDGEKLSRYEFLGELGLSGTLRGVNGAIPAALEAIKAGRQLILPNDNKREMTLIPQGEALMAGHL
LDVCAFLSGEEQLLSCSDITPVPPIEEDTLDLKDIIGQEQAKRALEIAAAGGHNLLLLGPPGTGKTMLASRLGNLMPPLS
DEEALESAAINSLINIDATMTRWRARPFRAPHHSSSMAALVGGGSLPKPGEISLAHNGVLFLDELPEFERRVLDSLREPL
ESGEIIISRTRAKVCYPARVQLVAAMNPSPSGHYQGVHNRLPAQQILRYLSKLSGPFLDRFDLSIEVPLLPPGVLSQQHY
QGESSATIRERVLIARQIQLKRANKINALLTSREIEKYCGLEMADATYLEEVMNKLGLSVRAWHRILKVARTIADLGGRD
NIERKHLAEALSYRCMDRLLIQLHKSLE

Nucleotide


Download         Length: 1527 bp        

>NTDB_id=413860 GT391_RS08490 WP_010283920.1 1900836..1902362(-) (comM) [Pectobacterium brasiliense strain 1692]
ATGTCATTGGCAGTTACCTATACTCGGGCAATGATTGGCGTACAAGCGCCAGACGTTTATATCGAAGTTCACATCAGCAG
CGGGCTACCAGCCCTAACGCTGGTGGGCTTACCAGAAACCACCGTCAAGGAAGCGCGCGATCGCGTGCGCAGCGCTCTCA
TCAATTGCGGATTTACGTTTCCGGCAAAGCGCATCACGGTCAATCTCGCCCCCGCAGACCTGCCAAAAGAAGGAGGACGC
TACGATCTGCCGATTGCTCTGGCGATTCTGGCGGCCTCAGAACAAATCGATGGTGAAAAGCTAAGCCGCTACGAGTTTCT
TGGCGAACTCGGCCTGTCTGGCACCTTACGTGGCGTCAATGGCGCGATTCCCGCCGCATTGGAAGCCATAAAAGCAGGCC
GCCAGCTTATCCTGCCAAATGACAACAAACGGGAGATGACGCTGATACCGCAGGGTGAAGCGCTGATGGCCGGGCATTTG
TTGGACGTGTGTGCTTTTCTCAGTGGAGAAGAGCAATTGCTCAGTTGCTCCGACATAACGCCCGTTCCACCGATCGAGGA
AGATACGCTCGATCTTAAGGATATCATCGGTCAGGAACAAGCTAAACGCGCGTTGGAAATCGCGGCGGCAGGCGGCCACA
ACTTGCTCTTGCTAGGGCCCCCGGGAACCGGGAAAACCATGCTGGCGAGTCGATTAGGCAATCTGATGCCACCATTAAGC
GATGAAGAAGCACTGGAAAGTGCCGCCATCAACAGCTTAATCAACATTGATGCCACCATGACGCGCTGGCGAGCCAGACC
ATTCAGAGCACCTCACCATAGTTCCTCTATGGCTGCGCTCGTGGGCGGAGGGTCGTTGCCTAAACCGGGGGAAATTTCAC
TCGCCCACAACGGTGTACTATTTTTGGACGAATTACCGGAGTTTGAGCGACGCGTACTAGACTCACTACGAGAGCCTCTG
GAGTCCGGTGAAATTATCATTTCCCGCACTCGGGCTAAGGTGTGCTACCCAGCACGGGTGCAGCTCGTTGCTGCAATGAA
TCCCAGCCCGTCAGGCCACTATCAGGGCGTTCATAACCGGTTGCCGGCACAACAAATACTGCGCTATCTCAGCAAACTTT
CCGGTCCCTTTTTGGATCGCTTTGACCTTTCAATCGAAGTCCCTTTACTACCACCAGGGGTTTTGTCTCAGCAACATTAT
CAAGGCGAAAGCAGCGCGACAATTCGCGAGCGCGTGCTGATCGCACGGCAGATACAGTTGAAACGGGCAAATAAAATCAA
CGCACTACTCACTTCACGTGAAATAGAAAAATACTGCGGATTGGAGATGGCTGATGCGACCTATTTGGAAGAGGTAATGA
ACAAACTTGGCTTATCCGTACGTGCATGGCACAGGATATTGAAAGTCGCGCGCACGATCGCTGACCTCGGCGGTCGGGAT
AATATTGAAAGAAAACACCTTGCCGAAGCGCTGAGCTATCGCTGTATGGATCGCTTGCTCATCCAGCTCCACAAAAGCCT
TGAATAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(191-390)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-494)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

64.229

99.606

0.64
  comM Vibrio cholerae strain A1552

64.612

99.016

0.64
  comM Glaesserella parasuis strain SC1401

63.654

100

0.638
  comM Vibrio campbellii strain DS40M4

63.043

99.606

0.628
  comM Legionella pneumophila str. Paris

50.902

98.228

0.5
  comM Legionella pneumophila strain ERS1305867

50.902

98.228

0.5
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.408

100

0.47

Multiple sequence alignment