Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   GTQ55_RS16975 Genome accession   NZ_CP047491
Coordinates   4023606..4025096 (+) Length   496 a.a.
NCBI ID   WP_161859793.1    Uniprot ID   A0A6P1TI54
Organism   Microbulbifer hydrolyticus strain IRE-31     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 4016269..4031550 4023606..4025096 within 0


Gene organization within MGE regions


Location: 4016269..4031550
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GTQ55_RS16935 (GTQ55_16945) xerC 4016275..4017189 (+) 915 WP_375791545.1 tyrosine recombinase XerC -
  GTQ55_RS16940 (GTQ55_16950) - 4017214..4019121 (-) 1908 WP_183946633.1 DUF3604 domain-containing protein -
  GTQ55_RS16945 (GTQ55_16955) - 4019288..4019500 (-) 213 WP_161859789.1 hypothetical protein -
  GTQ55_RS16950 (GTQ55_16960) - 4019937..4020275 (-) 339 WP_043319767.1 P-II family nitrogen regulator -
  GTQ55_RS16955 (GTQ55_16965) - 4020390..4021649 (-) 1260 WP_161859790.1 ammonium transporter -
  GTQ55_RS16960 (GTQ55_16970) - 4021741..4022079 (-) 339 WP_161859791.1 P-II family nitrogen regulator -
  GTQ55_RS16965 (GTQ55_16975) - 4022136..4022849 (-) 714 WP_237567740.1 TorF family putative porin -
  GTQ55_RS16970 (GTQ55_16980) - 4023298..4023519 (+) 222 WP_161859792.1 accessory factor UbiK family protein -
  GTQ55_RS16975 (GTQ55_16985) comM 4023606..4025096 (+) 1491 WP_161859793.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  GTQ55_RS16980 (GTQ55_16990) - 4025083..4025646 (-) 564 WP_161859794.1 GNAT family N-acetyltransferase -
  GTQ55_RS16985 (GTQ55_16995) - 4025660..4026187 (-) 528 WP_161859795.1 GNAT family N-acetyltransferase -
  GTQ55_RS16990 (GTQ55_17000) - 4026190..4026645 (-) 456 WP_161859796.1 YaiI/YqxD family protein -
  GTQ55_RS16995 (GTQ55_17005) - 4026645..4026878 (-) 234 WP_161859797.1 DUF3565 domain-containing protein -
  GTQ55_RS17000 (GTQ55_17010) - 4026935..4028350 (-) 1416 WP_161859798.1 hypothetical protein -
  GTQ55_RS17005 (GTQ55_17015) - 4028444..4029325 (-) 882 WP_161859799.1 helix-turn-helix domain-containing protein -
  GTQ55_RS17010 (GTQ55_17020) rep 4029517..4031550 (+) 2034 WP_161859800.1 DNA helicase Rep -

Sequence

Protein


Download         Length: 496 a.a.        Molecular weight: 53360.18 Da        Isoelectric Point: 7.5744

>NTDB_id=413793 GTQ55_RS16975 WP_161859793.1 4023606..4025096(+) (comM) [Microbulbifer hydrolyticus strain IRE-31]
MSLSITYARAQLGIQAPLVTVETHLANGLPAFNIVGLPEAAVRESRDRVRSAIVNSHFEFPQRRITVNLAPADLPKAGGR
YDLAIALGILAASGQVPGETLESYEFIGELALSGSLRPIPGALPAAMACRDSGRTLVTDNESACEAALIATPIKAASTLL
QVCAQLHGREPLPDAVQDAEQDAVICADLADVRGQLKARRALEVAAAGSHNLLFYGPPGTGKTMLASRLPGILPPLTDRE
MIEVAALYSSAGLDRVRQRPFRAPHHSASPTALVGGGSNPRPGEISLAHRGVLFLDEMPEFPRSALEILREPLENGEVRI
SRARAQVTFPADFQLVAAMNPCPCGYLSEPRCRCTPDQIDRYRRKLSGPLLDRIDMQVEVASMSASQLQDAPAGESSKTV
RERVRIAREIQLDRQKKINGELAGAELDEFCQLGSAESTLLRASVEKLGLSARSYHRVLKVARTLADLCGRKEIGTGQIA
EALAYRNLDRKTVMPA

Nucleotide


Download         Length: 1491 bp        

>NTDB_id=413793 GTQ55_RS16975 WP_161859793.1 4023606..4025096(+) (comM) [Microbulbifer hydrolyticus strain IRE-31]
ATGAGCCTATCCATTACCTACGCCCGCGCACAGCTGGGCATTCAGGCACCACTGGTCACGGTGGAGACCCACCTCGCCAA
TGGGCTGCCCGCATTTAATATTGTCGGCCTGCCCGAGGCTGCGGTGCGCGAGAGCCGCGACCGGGTGCGCAGCGCCATCG
TCAACAGCCATTTTGAATTTCCCCAGCGGCGCATCACCGTCAACCTGGCGCCGGCAGATTTGCCCAAGGCCGGCGGGCGC
TACGACCTGGCCATCGCCCTCGGCATCCTCGCCGCCTCCGGGCAGGTGCCCGGTGAGACACTGGAAAGCTACGAATTCAT
CGGCGAACTGGCGCTGTCCGGCAGTCTGCGCCCTATTCCCGGCGCGCTGCCCGCGGCGATGGCCTGCCGCGACAGCGGCC
GCACTCTGGTCACCGATAATGAATCAGCGTGTGAGGCCGCGCTGATCGCCACCCCGATCAAGGCCGCATCCACACTATTA
CAAGTATGTGCGCAGCTGCACGGCCGCGAGCCGTTGCCGGATGCGGTACAGGACGCCGAGCAGGATGCCGTCATCTGCGC
TGACCTCGCGGACGTGCGCGGCCAGCTGAAAGCCCGCCGCGCGCTGGAAGTGGCTGCTGCCGGCTCGCACAATCTGCTTT
TTTACGGCCCGCCCGGTACCGGAAAGACCATGCTCGCCAGCCGCCTGCCCGGTATTTTGCCGCCTTTGACCGACCGCGAA
ATGATCGAGGTGGCCGCGCTCTACTCCAGCGCTGGTCTCGACCGGGTGCGCCAGCGTCCGTTCCGCGCGCCACATCATTC
GGCCTCACCGACGGCGCTGGTCGGCGGCGGCAGCAACCCGCGTCCCGGCGAGATCAGCCTCGCCCACCGCGGGGTTCTGT
TTCTGGACGAGATGCCGGAATTCCCGCGCTCCGCCCTCGAGATACTGCGCGAGCCGCTGGAAAACGGTGAGGTGCGCATC
TCCCGCGCGCGCGCCCAGGTCACCTTCCCGGCAGACTTCCAGCTGGTGGCCGCGATGAATCCCTGCCCCTGCGGTTATCT
CAGCGAACCCCGCTGTCGCTGCACCCCGGACCAGATCGACCGCTACCGCAGAAAACTGTCCGGCCCGTTGCTCGACCGCA
TCGATATGCAGGTGGAAGTGGCGAGCATGAGCGCGAGTCAGCTACAGGACGCTCCGGCGGGAGAAAGCTCGAAAACCGTT
CGCGAGCGCGTACGAATCGCGCGGGAGATCCAGCTGGACCGGCAGAAAAAAATCAACGGGGAACTGGCTGGCGCTGAACT
GGATGAATTCTGCCAGCTTGGCAGTGCAGAGAGCACTCTGCTGCGCGCCTCGGTGGAAAAGTTGGGATTGTCCGCGCGCA
GTTATCACCGGGTATTGAAGGTCGCGCGCACGCTGGCGGACTTGTGCGGGCGGAAAGAAATTGGCACAGGGCAGATTGCC
GAGGCGCTGGCCTACCGCAATCTGGATCGCAAAACCGTCATGCCCGCTTAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(394-486)

Subunit ChlI of Mg-chelatase (ChlI)

(21-135)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(188-386)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6P1TI54

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

54.491

100

0.55
  comM Haemophilus influenzae Rd KW20

53.493

100

0.54
  comM Vibrio campbellii strain DS40M4

53.213

100

0.534
  comM Glaesserella parasuis strain SC1401

51.697

100

0.522
  comM Legionella pneumophila str. Paris

50.1

100

0.506
  comM Legionella pneumophila strain ERS1305867

50.1

100

0.506
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.817

100

0.464

Multiple sequence alignment