Detailed information NTG0413452

Bioinformatically predicted

Overview

• Name: comM
• Type: Machinery gene
• Locus tag: GM320_RS10365
• Genome accession: NZ_CP047422
• Coordinates: 2114314..2115834 (-)
• Length: 506 a.a.
• NCBI ID: WP_159352743.1
• Uniprot ID: -
• Organism: Shewanella algae strain 18064-CSB-B-B
• Function: ssDNA binding (predicted from homology) DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
IScluster/Tn	2111080..2117800	2114314..2115834	within	0

Gene organization within MGE regions

Location: 2111080..2117800

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GM320_RS10350 (GM320_10350)	-	2111080..2112201 (+)	1122	WP_071237152.1	ISAs1 family transposase	-
GM320_RS10355 (GM320_10355)	caiA	2112548..2113684 (+)	1137	WP_028780099.1	crotonobetainyl-CoA dehydrogenase	-
GM320_RS10360 (GM320_10360)	-	2113771..2114139 (-)	369	WP_082052712.1	hypothetical protein	-
GM320_RS10365 (GM320_10365)	comM	2114314..2115834 (-)	1521	WP_159352743.1	YifB family Mg chelatase-like AAA ATPase	Machinery gene
GM320_RS10370 (GM320_10370)	-	2115992..2116492 (-)	501	WP_054744206.1	hypothetical protein	-
GM320_RS10375 (GM320_10375)	-	2116885..2117800 (-)	916	Protein_1860	IS5 family transposase	-

Sequence

Protein

• Length: 506 a.a.
• Molecular weight: 54471.92 Da
• Isoelectric Point: 8.7098

>NTDB_id=413452 GM320_RS10365 WP_159352743.1 2114314..2115834(-) (comM) [Shewanella algae strain 18064-CSB-B-B]
MPIARVATRAAKGVEAPQVLVEAHLSNGLPAFNLVGLPEASVKEARERVRSAIINAGFEFPMRRITINLAPADLPKQGGR
YDLPIAIGILAASGQLPLKSLDDHEFVGELGLSGEVRHCTGILPVIIAARQRGIKLVLPQDNRSEADLVGYRQCCLAQHL
QHIAAYLHGQQTLPGIVPGTEWLEQSKPHSSDCLSEVIGQYQAKQALEIAAAGGHNLLMLGPPGTGKTMLASRIISLLPP
MSYEEALEVAAIHSVAGMATEPGEFYRRPFRAPHHTSSAISLVGGGSIPKPGEISLAHLGVLFLDEIAEFPRKVLDCLRE
PMETGHVIISRAAAKLRFDARFQLIAAMNPSPCGDAGPGSRASPEQIRRYLARLSGPFIDRFDLTIEVPKLPPGALTSEA
AQGETSEQIAARVAAARELQLSRAGVLNSQLGSKALKQTGFKPGDLAFLEQSVNQLGLSVRSFHRLQRVARTIADLQLSP
MVERRHLAQALGYRAMDRLLASLQQL

Nucleotide

• Length: 1521 bp

>NTDB_id=413452 GM320_RS10365 WP_159352743.1 2114314..2115834(-) (comM) [Shewanella algae strain 18064-CSB-B-B]
ATGCCCATAGCCAGAGTTGCCACCCGAGCCGCCAAAGGTGTGGAGGCGCCTCAGGTACTGGTCGAAGCTCACCTCTCCAA
CGGCCTGCCGGCCTTCAATCTGGTGGGGTTGCCGGAAGCTTCGGTCAAGGAAGCCAGAGAAAGAGTCCGCAGCGCCATAA
TCAATGCGGGTTTTGAATTCCCCATGCGCAGGATCACCATCAATCTGGCACCGGCCGATCTGCCCAAGCAAGGTGGACGT
TACGACCTTCCTATTGCCATTGGTATTCTGGCAGCATCCGGGCAACTGCCACTGAAATCTCTGGACGATCATGAATTTGT
CGGTGAGCTTGGGCTGTCCGGTGAGGTCAGGCACTGCACTGGTATCCTGCCGGTGATCATCGCCGCCCGTCAAAGAGGCA
TCAAACTGGTGTTGCCACAGGATAACCGCAGTGAGGCGGATTTGGTGGGCTACCGGCAATGTTGCCTGGCCCAGCACCTG
CAACATATCGCCGCCTATCTGCACGGGCAACAAACCCTGCCGGGGATAGTACCGGGAACCGAATGGCTGGAACAGTCCAA
GCCGCACTCGAGTGACTGCCTGTCGGAGGTCATAGGCCAATATCAAGCCAAACAAGCACTGGAAATCGCTGCCGCCGGCG
GGCATAACCTGCTGATGCTGGGGCCACCTGGCACAGGCAAAACCATGCTGGCCAGCCGGATAATCTCACTCCTGCCCCCC
ATGAGTTATGAAGAGGCGCTGGAAGTGGCTGCGATTCATTCAGTGGCCGGTATGGCTACTGAGCCGGGGGAGTTTTATCG
CCGCCCGTTTCGCGCTCCGCACCATACCAGCTCCGCCATCTCTTTGGTGGGTGGCGGCTCGATTCCCAAACCCGGCGAGA
TTTCACTGGCTCACCTGGGAGTGCTGTTTCTCGATGAAATTGCCGAGTTTCCCCGCAAGGTACTCGACTGCTTGCGTGAA
CCCATGGAAACCGGCCATGTCATCATCTCCCGCGCCGCAGCCAAACTGCGCTTCGATGCCCGTTTTCAACTCATCGCCGC
CATGAATCCCAGCCCTTGTGGAGATGCCGGCCCGGGAAGCCGCGCCAGCCCAGAGCAGATCCGCCGTTACCTGGCCCGGC
TGTCAGGCCCTTTCATTGACAGATTCGACCTCACCATTGAGGTGCCCAAACTCCCGCCAGGCGCCTTGACCTCAGAGGCG
GCGCAAGGTGAAACCAGTGAGCAGATAGCCGCCAGAGTAGCGGCAGCGCGGGAGCTGCAACTCAGCCGCGCCGGCGTACT
CAATAGTCAGTTGGGCAGTAAGGCATTGAAGCAGACAGGTTTCAAACCCGGCGATCTGGCGTTTCTCGAACAGAGTGTCA
ATCAGCTGGGATTATCGGTGCGCAGCTTTCATCGGCTGCAACGAGTGGCGCGCACCATAGCCGATCTGCAGCTCAGCCCC
ATGGTCGAGCGGCGCCATCTGGCCCAGGCCCTGGGTTATCGGGCGATGGACCGTTTGCTGGCCAGTCTGCAACAGCTTTA
A

Domains

Predicted by InterproScan.

• Subunit ChlI of Mg-chelatase (ChlI) (21-142)

• Magnesium chelatase, subunit ChlI (Mg_chelatase) (194-392)

• Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C) (403-494)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comM	Vibrio cholerae strain A1552	55.819	100	0.559
comM	Haemophilus influenzae Rd KW20	54.883	100	0.555
comM	Vibrio campbellii strain DS40M4	55.227	100	0.553
comM	Glaesserella parasuis strain SC1401	54.832	100	0.549
comM	Legionella pneumophila str. Paris	47.896	98.617	0.472
comM	Legionella pneumophila strain ERS1305867	47.896	98.617	0.472
RA0C_RS07335	Riemerella anatipestifer ATCC 11845 = DSM 15868	43.281	100	0.433