Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   RTA_RS00680 Genome accession   NC_015677
Coordinates   143132..144679 (-) Length   515 a.a.
NCBI ID   WP_041674927.1    Uniprot ID   -
Organism   Ramlibacter tataouinensis TTB310     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 138132..149679
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RTA_RS00665 (Rta_01390) metH 138815..141550 (+) 2736 WP_013899435.1 methionine synthase -
  RTA_RS21400 (Rta_01400) - 141633..142091 (+) 459 WP_013899436.1 glycine zipper 2TM domain-containing protein -
  RTA_RS00675 (Rta_01410) - 142174..143115 (+) 942 WP_013899437.1 YihY/virulence factor BrkB family protein -
  RTA_RS00680 (Rta_01420) comM 143132..144679 (-) 1548 WP_041674927.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  RTA_RS00685 (Rta_01430) - 144974..145714 (+) 741 WP_013899439.1 TorF family putative porin -
  RTA_RS00690 (Rta_01440) glnK 145741..146079 (+) 339 WP_013899440.1 P-II family nitrogen regulator -
  RTA_RS00695 (Rta_01450) - 146105..147580 (+) 1476 WP_013899441.1 ammonium transporter -
  RTA_RS00700 (Rta_01460) - 147800..149053 (+) 1254 WP_013899442.1 M14 family zinc carboxypeptidase -

Sequence

Protein


Download         Length: 515 a.a.        Molecular weight: 53493.38 Da        Isoelectric Point: 8.5255

>NTDB_id=41338 RTA_RS00680 WP_041674927.1 143132..144679(-) (comM) [Ramlibacter tataouinensis TTB310]
MSLSLVQSRALVGLEAASVTVEVHLANGLPSFTLVGLAETEVKEARERVRSALQNAGLEFPHNKRITVNLAPADLPKDSG
RFDLAIALGILAASGQIDGSRLAGHEFAGELSLSGELRPVRGALAMSLALQAAEPALALVLPPGSAEEAALVPGAAVWRA
VHLLDVVRRFLPEGSAAADGPPGEGWSRMAGGAPAAAPAVYPDLADVKGQAAAKRALEIAAAGGHGLLLVGPPGSGKSML
AQRFAGLLPPMTVQEALESAAVASLAGQFLLERWARRPTCSPHHSASAAALVGGGSPPRPGEISLAHQGVLFLDELPEFP
RAALEALREPLETGHITIARAARRSQFPARFQFVGAMNPCPCGWRGAAHRACRCTPDQVARYQGKLSGPLLDRIDLHLEV
PALAPRELLEAPPGESTAAVRARCVAARGRALERQGKPNQALAGREIDQHARLDAAAAAFLQTAAARLGWSARATHRALK
VARSIADLEGAAGVQVAHVAEAVQYRRGLMMDGAG

Nucleotide


Download         Length: 1548 bp        

>NTDB_id=41338 RTA_RS00680 WP_041674927.1 143132..144679(-) (comM) [Ramlibacter tataouinensis TTB310]
TTGAGCCTCTCCCTGGTGCAAAGCCGTGCCCTGGTCGGGCTGGAGGCCGCCTCGGTGACGGTCGAGGTCCACCTCGCCAA
CGGCCTGCCCAGCTTCACCCTGGTGGGGCTGGCCGAGACGGAGGTGAAGGAGGCGCGCGAACGCGTGCGCTCGGCGCTGC
AGAACGCCGGCCTGGAATTCCCGCACAACAAGCGCATCACGGTCAACCTGGCGCCGGCCGACCTGCCCAAGGACTCGGGC
CGCTTCGACCTGGCGATCGCCCTGGGCATCCTGGCGGCCAGCGGGCAGATCGACGGCAGCCGGCTGGCCGGCCACGAATT
CGCCGGCGAGCTGTCGCTGTCGGGCGAGCTGCGGCCGGTGCGCGGCGCGCTGGCCATGAGCCTGGCGCTGCAGGCCGCCG
AGCCCGCCCTGGCTTTGGTGCTGCCGCCCGGCAGCGCGGAAGAGGCGGCCCTGGTGCCGGGCGCCGCGGTCTGGCGCGCC
GTCCATCTGCTGGACGTGGTGCGCCGCTTCCTGCCGGAGGGAAGTGCGGCAGCCGACGGCCCGCCCGGCGAGGGCTGGTC
GCGCATGGCGGGCGGGGCACCCGCGGCGGCGCCCGCGGTCTACCCGGACCTGGCCGACGTGAAGGGCCAGGCCGCGGCCA
AGCGCGCGCTGGAGATCGCCGCCGCCGGCGGCCATGGCCTGCTGCTGGTCGGACCGCCCGGTTCGGGCAAGTCCATGCTG
GCCCAGCGCTTCGCCGGCCTGTTGCCGCCGATGACGGTGCAGGAGGCGCTGGAAAGCGCCGCGGTCGCCAGCCTGGCCGG
ACAGTTCTTGCTGGAACGCTGGGCACGCCGGCCCACCTGCAGCCCGCACCATTCGGCCAGCGCGGCGGCGCTGGTGGGCG
GCGGCTCGCCGCCGCGGCCGGGGGAGATTTCCCTGGCGCACCAGGGCGTGCTCTTCCTCGACGAGCTCCCCGAGTTCCCG
CGTGCCGCGCTGGAGGCGCTGCGCGAGCCGCTGGAGACCGGGCACATCACCATCGCCCGTGCCGCGCGGCGCTCGCAATT
CCCGGCGCGCTTCCAGTTCGTGGGCGCGATGAACCCCTGCCCTTGCGGCTGGCGCGGCGCGGCGCACCGGGCCTGCCGCT
GCACGCCCGACCAGGTGGCGCGCTACCAGGGCAAGCTGTCCGGTCCGCTGCTGGACCGCATCGACCTGCACCTGGAGGTG
CCGGCGCTGGCGCCGCGGGAGCTGCTGGAGGCGCCGCCGGGCGAGTCCACGGCCGCGGTGCGCGCCCGCTGCGTGGCCGC
GCGCGGGCGCGCCCTGGAGCGCCAGGGCAAGCCCAACCAGGCGCTGGCGGGCCGCGAGATCGACCAGCACGCCCGGCTGG
ACGCGGCCGCGGCGGCATTCCTGCAGACGGCGGCGGCCCGCCTGGGCTGGAGCGCGCGCGCCACGCACCGCGCGCTGAAG
GTCGCACGCAGCATCGCCGACCTGGAGGGCGCGGCCGGCGTGCAGGTGGCGCACGTGGCGGAGGCGGTGCAGTACCGGCG
CGGCCTCATGATGGACGGCGCCGGCTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(414-506)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(203-406)

Subunit ChlI of Mg-chelatase (ChlI)

(21-134)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

52.756

98.641

0.52
  comM Vibrio campbellii strain DS40M4

52.165

98.641

0.515
  comM Haemophilus influenzae Rd KW20

51.569

99.029

0.511
  comM Glaesserella parasuis strain SC1401

51.373

99.029

0.509
  comM Legionella pneumophila str. Paris

46.99

100

0.47
  comM Legionella pneumophila strain ERS1305867

46.99

100

0.47
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.633

98.835

0.421

Multiple sequence alignment