Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   H5404_RS05135 Genome accession   NZ_CP060087
Coordinates   1134599..1134808 (-) Length   69 a.a.
NCBI ID   WP_031412866.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain TJA114     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 1129599..1139808
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H5404_RS05125 (H5404_05125) - 1130768..1131781 (-) 1014 WP_140219790.1 restriction endonuclease -
  H5404_RS05130 (H5404_05130) - 1131848..1134166 (-) 2319 WP_140219792.1 AAA family ATPase -
  H5404_RS05135 (H5404_05135) sinR 1134599..1134808 (-) 210 WP_031412866.1 helix-turn-helix domain-containing protein Regulator
  H5404_RS05140 (H5404_05140) - 1134908..1135453 (+) 546 WP_140219794.1 hypothetical protein -
  H5404_RS05145 (H5404_05145) - 1135455..1136762 (+) 1308 WP_031412862.1 HipA domain-containing protein -
  H5404_RS05150 (H5404_05150) - 1136824..1137027 (+) 204 WP_180767322.1 hypothetical protein -
  H5404_RS05155 (H5404_05155) - 1137024..1137224 (+) 201 WP_031412857.1 hypothetical protein -
  H5404_RS05160 (H5404_05160) - 1137221..1137583 (+) 363 WP_031412855.1 transcriptional regulator -
  H5404_RS05165 (H5404_05165) - 1137558..1137797 (-) 240 WP_232105193.1 hypothetical protein -
  H5404_RS05170 (H5404_05170) - 1137947..1138186 (-) 240 WP_031412853.1 hypothetical protein -
  H5404_RS05175 (H5404_05175) - 1138487..1139590 (+) 1104 WP_140219799.1 hypothetical protein -

Sequence

Protein


Download         Length: 69 a.a.        Molecular weight: 7830.31 Da        Isoelectric Point: 10.0111

>NTDB_id=413379 H5404_RS05135 WP_031412866.1 1134599..1134808(-) (sinR) [Vibrio parahaemolyticus strain TJA114]
MNTKLAEAVGQRIVQMRKSKGLPQEKLALLAEIDRSYMSRIERGKINITLEKLYKIADTLGCDVKELLP

Nucleotide


Download         Length: 210 bp        

>NTDB_id=413379 H5404_RS05135 WP_031412866.1 1134599..1134808(-) (sinR) [Vibrio parahaemolyticus strain TJA114]
ATGAACACGAAACTTGCCGAAGCAGTAGGCCAACGTATTGTACAAATGAGAAAATCCAAAGGCTTACCTCAAGAGAAACT
AGCCCTTCTCGCTGAGATAGATAGAAGCTATATGAGCCGCATCGAACGCGGTAAAATCAATATCACGCTTGAAAAGTTGT
ATAAGATTGCAGACACTTTGGGCTGTGATGTGAAGGAGTTATTGCCGTAA

Domains

Predicted by InterProScan.

Helix-turn-helix (HTH_3)

(15-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comR/comR2 Streptococcus sobrinus strain NIDR 6715-7

38.462

94.203

0.362
  sinR Bacillus subtilis subsp. subtilis str. 168

40.984

88.406

0.362
  comR Streptococcus salivarius strain HSISS4

36.232

100

0.362
  comR Streptococcus thermophilus LMG 18311

36.232

100

0.362
  comR Streptococcus salivarius SK126

36.232

100

0.362