Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   GS400_RS19890 Genome accession   NZ_CP047393
Coordinates   3957467..3957946 (-) Length   159 a.a.
NCBI ID   WP_160104453.1    Uniprot ID   A0A6P1HLT7
Organism   Pontibacillus sp. HMF3514     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3952467..3962946
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GS400_RS19870 (GS400_19870) rplI 3953426..3953872 (-) 447 WP_160104450.1 50S ribosomal protein L9 -
  GS400_RS19875 (GS400_19875) - 3953869..3955842 (-) 1974 WP_160104451.1 DHH family phosphoesterase -
  GS400_RS19880 (GS400_19880) - 3955874..3956815 (-) 942 WP_160104452.1 YybS family protein -
  GS400_RS19885 (GS400_19885) rpsR 3957214..3957441 (-) 228 WP_027448469.1 30S ribosomal protein S18 -
  GS400_RS19890 (GS400_19890) ssbA 3957467..3957946 (-) 480 WP_160104453.1 single-stranded DNA-binding protein Machinery gene
  GS400_RS19895 (GS400_19895) rpsF 3957958..3958248 (-) 291 WP_160104454.1 30S ribosomal protein S6 -
  GS400_RS19900 (GS400_19900) ychF 3958378..3959478 (-) 1101 WP_160104455.1 redox-regulated ATPase YchF -
  GS400_RS19905 (GS400_19905) - 3959708..3959908 (-) 201 WP_160104456.1 DUF951 domain-containing protein -
  GS400_RS19910 (GS400_19910) - 3959920..3960828 (-) 909 WP_160104710.1 mechanosensitive ion channel family protein -
  GS400_RS19915 (GS400_19915) - 3960862..3961881 (-) 1020 WP_160104457.1 hypothetical protein -
  GS400_RS19920 (GS400_19920) yyaC 3961973..3962605 (+) 633 WP_160104458.1 spore protease YyaC -

Sequence

Protein


Download         Length: 159 a.a.        Molecular weight: 17374.92 Da        Isoelectric Point: 4.6742

>NTDB_id=413232 GS400_RS19890 WP_160104453.1 3957467..3957946(-) (ssbA) [Pontibacillus sp. HMF3514]
MLNRVVLVGRLTKDPDLRYTPNGVAVANFTIAVNRPFNSQQGGKDADFINCVVWRRAAENLANFMKKGSQVGVDGRLQSR
SFDNSEGKRVFVTEVVADSVQFLESKGSGSGGAGSQGFQNNNQNQFGNNNQNQQSNQNQEDPFSNNGDPIDISDDDLPF

Nucleotide


Download         Length: 480 bp        

>NTDB_id=413232 GS400_RS19890 WP_160104453.1 3957467..3957946(-) (ssbA) [Pontibacillus sp. HMF3514]
GTGTTAAATCGTGTCGTGCTTGTCGGCAGATTAACGAAGGATCCTGATTTGCGCTATACACCCAACGGAGTAGCCGTTGC
GAACTTTACAATTGCAGTAAACCGACCTTTTAACAGTCAACAGGGAGGAAAGGACGCAGACTTCATTAACTGTGTTGTTT
GGCGTCGTGCTGCAGAAAACCTTGCGAACTTTATGAAAAAAGGTAGCCAGGTTGGTGTTGATGGAAGATTGCAAAGCCGC
AGTTTTGACAACTCAGAAGGTAAGAGAGTATTTGTGACTGAGGTTGTAGCTGATAGTGTACAATTCTTAGAATCAAAAGG
CTCTGGATCAGGTGGCGCAGGTTCTCAAGGATTCCAGAATAATAATCAGAACCAATTTGGAAATAACAATCAAAATCAAC
AATCGAACCAAAACCAAGAGGACCCATTCTCGAATAATGGAGATCCAATTGATATATCTGACGATGATTTACCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6P1HLT7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

62.209

100

0.673
  ssb Latilactobacillus sakei subsp. sakei 23K

55.882

100

0.597
  ssbB Bacillus subtilis subsp. subtilis str. 168

58.491

66.667

0.39
  ssb Glaesserella parasuis strain SC1401

33.333

100

0.371
  ssb Neisseria gonorrhoeae MS11

33.143

100

0.365

Multiple sequence alignment