Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   GRX59_RS21680 Genome accession   NZ_CP047391
Coordinates   4597524..4598057 (-) Length   177 a.a.
NCBI ID   WP_033654707.1    Uniprot ID   -
Organism   Serratia marcescens strain 1602     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4592524..4603057
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GRX59_RS21665 (GRX59_21675) - 4592542..4594551 (-) 2010 WP_058700830.1 hypothetical protein -
  GRX59_RS21670 (GRX59_21680) - 4594544..4596127 (-) 1584 WP_159360903.1 tyrosine-type recombinase/integrase -
  GRX59_RS21675 (GRX59_21685) - 4596133..4597305 (-) 1173 WP_060438293.1 site-specific integrase -
  GRX59_RS21680 (GRX59_21690) ssb 4597524..4598057 (-) 534 WP_033654707.1 single-stranded DNA-binding protein SSB1 Machinery gene
  GRX59_RS21685 (GRX59_21695) uvrA 4598335..4601163 (+) 2829 WP_060427051.1 excinuclease ABC subunit UvrA -
  GRX59_RS21690 (GRX59_21700) - 4601393..4602445 (+) 1053 WP_060438292.1 NAD(P)-dependent alcohol dehydrogenase -
  GRX59_RS21695 (GRX59_21705) maa 4602476..4603033 (-) 558 WP_041036886.1 maltose O-acetyltransferase -

Sequence

Protein


Download         Length: 177 a.a.        Molecular weight: 18865.76 Da        Isoelectric Point: 5.2358

>NTDB_id=413189 GRX59_RS21680 WP_033654707.1 4597524..4598057(-) (ssb) [Serratia marcescens strain 1602]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEQKEKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGSLQTRKWQDQSGQDRYTTEIVVNVGGTMQMLGGRQGGGAPAGQSAGGQGGWGQPQQPQGGNQFSGGQQQSRPAQNSAP
AASSNEPPMDFDDDIPF

Nucleotide


Download         Length: 534 bp        

>NTDB_id=413189 GRX59_RS21680 WP_033654707.1 4597524..4598057(-) (ssb) [Serratia marcescens strain 1602]
ATGGCCAGCAGAGGCGTAAACAAAGTAATTCTGGTCGGGAACCTGGGTCAGGATCCAGAAGTCCGTTACATGCCGAACGG
CGGCGCAGTGGCCAACATTACCCTGGCGACCTCCGAAAGCTGGCGTGACAAGGCGACCGGCGAACAGAAAGAGAAGACCG
AGTGGCACCGCGTCGTGCTGTTCGGCAAACTGGCCGAAGTGGCGGGCGAATACCTGCGTAAAGGCTCTCAGGTCTACATC
GAAGGCTCCCTGCAGACCCGTAAATGGCAGGATCAGAGCGGCCAGGATCGCTACACCACCGAGATCGTGGTTAACGTCGG
CGGCACCATGCAGATGCTGGGCGGCCGTCAGGGCGGCGGCGCACCGGCCGGTCAATCTGCCGGCGGCCAGGGCGGTTGGG
GCCAGCCTCAGCAGCCACAGGGCGGCAACCAGTTCAGCGGCGGCCAGCAGCAGTCGCGCCCGGCGCAAAACAGCGCTCCG
GCGGCCAGCAGCAACGAACCGCCAATGGATTTCGACGACGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

75.824

100

0.78
  ssb Glaesserella parasuis strain SC1401

59.358

100

0.627
  ssb Neisseria meningitidis MC58

47.594

100

0.503
  ssb Neisseria gonorrhoeae MS11

47.594

100

0.503
  ssbA Bacillus subtilis subsp. subtilis str. 168

36.158

100

0.362

Multiple sequence alignment