Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   PJ20_RS02295 Genome accession   NZ_CP047386
Coordinates   526848..528401 (-) Length   517 a.a.
NCBI ID   WP_039365416.1    Uniprot ID   -
Organism   Pandoraea fibrosis strain 7641     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 521848..533401
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PJ20_RS02275 (PJ20_002275) - 523274..524626 (+) 1353 WP_039365537.1 sigma-54-dependent transcriptional regulator -
  PJ20_RS02280 (PJ20_002280) - 524867..525391 (-) 525 WP_039365412.1 TlpA disulfide reductase family protein -
  PJ20_RS24750 - 525448..526221 (-) 774 WP_236105711.1 hypothetical protein -
  PJ20_RS02290 (PJ20_002290) - 526293..526832 (+) 540 WP_039365415.1 hypothetical protein -
  PJ20_RS02295 (PJ20_002295) comM 526848..528401 (-) 1554 WP_039365416.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  PJ20_RS02300 (PJ20_002300) - 528716..528964 (-) 249 WP_039365419.1 accessory factor UbiK family protein -
  PJ20_RS02305 (PJ20_002305) - 529361..530209 (+) 849 WP_039365421.1 TorF family putative porin -
  PJ20_RS02310 (PJ20_002310) - 530223..530561 (+) 339 WP_010804740.1 P-II family nitrogen regulator -
  PJ20_RS02315 (PJ20_002315) amt 530587..532131 (+) 1545 WP_039365431.1 ammonium transporter -

Sequence

Protein


Download         Length: 517 a.a.        Molecular weight: 54159.78 Da        Isoelectric Point: 8.4374

>NTDB_id=413153 PJ20_RS02295 WP_039365416.1 526848..528401(-) (comM) [Pandoraea fibrosis strain 7641]
MSLAVVSSRAITGMAARAVTVEVHLANGLPGLSLVGLPDTEVKESRERVRSALQNSRFEFPARRITVNLAPADLPKASGC
FDLPIALGILAASGQLPEAGLRTHEFAGELSLTGELRAVRGGLAMASAVAAEPSARALVLPAGSAQEAALVEDATVYGAR
TLLDVCAHLAEPGVAIPLPRAVVPSAVAAASGVGHDGARATGLAETSDISDVKGQAHAKRALEVAAAGGHHILFYGPPGT
GKSMLATRLAGLLPALSKAQAVEAATLASLSAQGFDMRHWGRRPFRAPHHTASSAALVGGGSAPRPGEISLAHRGVLFLD
ELPEFQRRVLEVLREPLELGYVTISRAGGHATFPAAFQLVAAMNPCPCGDLGHPSRSCRCTSEAVARYRGRLSGPLLERI
DLHVEVPALNAETFAAPASGERSDVVARRVRQARERQLSRQGQLNCGLSGRALETQCALRPDALDVLHRAVTQHHWSART
YHRVLRVARTVADLAGCTDIDAHHVGEAVQYREAPAS

Nucleotide


Download         Length: 1554 bp        

>NTDB_id=413153 PJ20_RS02295 WP_039365416.1 526848..528401(-) (comM) [Pandoraea fibrosis strain 7641]
ATGTCATTGGCAGTTGTCAGCAGCCGGGCGATCACAGGAATGGCGGCACGCGCGGTCACCGTGGAGGTACATCTGGCCAA
CGGGCTGCCGGGCCTGTCGCTGGTCGGTCTGCCCGATACCGAGGTCAAGGAAAGCCGTGAGCGCGTGCGCTCGGCATTGC
AGAACAGCCGGTTCGAATTCCCCGCGCGGCGCATCACCGTCAATCTGGCCCCGGCCGATCTGCCGAAGGCGTCCGGCTGT
TTCGATCTGCCGATAGCGCTGGGCATTCTCGCGGCGAGCGGTCAGTTGCCCGAAGCTGGGCTGCGCACCCACGAGTTTGC
TGGCGAGTTGTCGCTCACCGGAGAGTTGCGCGCCGTGCGAGGCGGGTTGGCCATGGCGAGCGCCGTTGCCGCCGAACCCT
CGGCACGCGCGCTGGTGCTGCCCGCCGGCAGTGCGCAGGAGGCCGCACTGGTCGAAGACGCCACGGTCTATGGCGCACGC
ACCTTGCTCGACGTCTGCGCGCACCTTGCCGAACCCGGCGTGGCGATACCGCTGCCGCGCGCCGTAGTCCCGAGCGCCGT
CGCGGCAGCGTCTGGCGTCGGCCACGATGGCGCACGCGCCACCGGCCTCGCCGAGACAAGCGACATCAGTGATGTCAAAG
GACAGGCCCATGCCAAACGCGCACTGGAAGTTGCAGCGGCGGGCGGGCATCACATTCTGTTTTACGGACCACCGGGCACG
GGCAAGTCGATGCTGGCGACGCGGCTCGCCGGGTTGCTCCCCGCGTTGAGCAAAGCGCAGGCGGTCGAAGCGGCCACGCT
GGCCAGCCTGAGCGCACAGGGCTTCGATATGCGGCATTGGGGACGGCGGCCGTTCCGTGCGCCGCATCACACGGCGTCGT
CGGCAGCCCTGGTGGGCGGAGGGAGTGCACCGCGTCCCGGCGAAATCAGCCTTGCCCATCGCGGCGTGCTGTTTCTCGAC
GAATTGCCCGAATTCCAGCGGCGCGTGCTCGAAGTCTTACGCGAACCACTGGAGCTGGGTTACGTCACGATCTCACGCGC
GGGCGGCCACGCCACGTTCCCCGCGGCCTTCCAACTCGTGGCCGCCATGAACCCCTGTCCGTGCGGCGATCTGGGACATC
CGTCACGAAGCTGCCGTTGTACAAGTGAAGCAGTGGCACGCTATCGCGGCCGTCTTTCGGGACCACTGCTTGAGCGCATC
GACCTGCATGTCGAAGTGCCCGCGCTGAACGCCGAGACGTTCGCCGCCCCGGCCAGCGGCGAGCGCAGCGACGTCGTGGC
GCGACGTGTCAGGCAAGCGCGTGAGCGTCAGTTGTCGCGACAGGGACAGTTGAACTGCGGCTTGTCGGGGCGCGCCCTGG
AAACACAATGCGCGCTGCGCCCAGACGCTCTGGACGTTCTGCACCGGGCAGTGACGCAGCACCATTGGTCCGCACGCACC
TATCACCGCGTCCTGCGCGTGGCACGCACGGTGGCCGATCTTGCCGGTTGTACCGACATCGACGCTCACCACGTCGGCGA
GGCGGTGCAGTATCGCGAAGCCCCGGCATCGTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(208-412)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(420-512)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

51.072

99.226

0.507
  comM Haemophilus influenzae Rd KW20

49.903

99.226

0.495
  comM Vibrio campbellii strain DS40M4

49.708

99.226

0.493
  comM Glaesserella parasuis strain SC1401

49.126

99.613

0.489
  comM Legionella pneumophila str. Paris

46.99

99.613

0.468
  comM Legionella pneumophila strain ERS1305867

46.99

99.613

0.468
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.883

99.613

0.437

Multiple sequence alignment