Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   PI93_RS02895 Genome accession   NZ_CP047385
Coordinates   658997..659506 (+) Length   169 a.a.
NCBI ID   WP_039373799.1    Uniprot ID   -
Organism   Pandoraea fibrosis strain 6399     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 653997..664506
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PI93_RS02885 (PI93_002885) uvrA 654457..657321 (-) 2865 WP_039373794.1 excinuclease ABC subunit UvrA -
  PI93_RS02890 (PI93_002890) - 657743..658966 (+) 1224 WP_039373797.1 MFS transporter -
  PI93_RS02895 (PI93_002895) ssb 658997..659506 (+) 510 WP_039373799.1 single-stranded DNA-binding protein Machinery gene
  PI93_RS02900 (PI93_002900) - 659720..660643 (-) 924 WP_039373800.1 alpha/beta fold hydrolase -
  PI93_RS02905 (PI93_002905) - 661017..661676 (+) 660 WP_052240927.1 DedA family protein -
  PI93_RS02910 (PI93_002910) - 661911..662576 (+) 666 WP_039373802.1 GntR family transcriptional regulator -
  PI93_RS02915 (PI93_002915) - 662962..664038 (+) 1077 WP_201278422.1 TauD/TfdA family dioxygenase -

Sequence

Protein


Download         Length: 169 a.a.        Molecular weight: 17670.38 Da        Isoelectric Point: 5.3095

>NTDB_id=413141 PI93_RS02895 WP_039373799.1 658997..659506(+) (ssb) [Pandoraea fibrosis strain 6399]
MASVNKVILVGNLGADPEVRYLPSGDAVANIRLATTDRYKDKQSGEFKEMTEWHRVSFFGRLAEIVNEYLKKGSSVYIEG
KIRTRKYQAQDGTDRYSTDIVADQMQMLGGRGGEGGGGGGGYSRGGGDEGGGGGGYSRGGGGGGGGARQQAPAKQSGGGF
DDMDDDIPF

Nucleotide


Download         Length: 510 bp        

>NTDB_id=413141 PI93_RS02895 WP_039373799.1 658997..659506(+) (ssb) [Pandoraea fibrosis strain 6399]
ATGGCATCAGTCAACAAAGTGATCCTGGTCGGTAACCTTGGCGCCGACCCCGAAGTCCGCTATTTGCCGAGCGGCGATGC
GGTCGCGAACATTCGTCTGGCGACGACCGACCGTTACAAGGACAAGCAATCCGGCGAGTTCAAGGAGATGACGGAATGGC
ACCGCGTGTCGTTCTTCGGCCGTCTCGCCGAGATCGTCAACGAGTACCTGAAGAAGGGCTCGTCGGTGTACATCGAGGGT
AAGATCCGCACGCGCAAGTACCAGGCGCAGGACGGCACGGACCGTTACAGCACGGATATCGTGGCTGACCAGATGCAAAT
GCTGGGTGGCCGTGGTGGCGAGGGCGGTGGCGGCGGCGGTGGCTACTCGCGTGGCGGCGGCGACGAAGGTGGCGGCGGTG
GTGGCTATTCGCGCGGCGGTGGCGGTGGCGGCGGCGGTGCGCGTCAGCAAGCGCCGGCCAAGCAGTCGGGCGGTGGCTTC
GATGACATGGACGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

50.838

100

0.538
  ssb Glaesserella parasuis strain SC1401

47.778

100

0.509
  ssb Neisseria meningitidis MC58

44.318

100

0.462
  ssb Neisseria gonorrhoeae MS11

44.318

100

0.462
  ssbA Bacillus subtilis subsp. subtilis str. 168

35.196

100

0.373

Multiple sequence alignment