Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   GO992_RS12380 Genome accession   NZ_CP047374
Coordinates   2637784..2639298 (+) Length   504 a.a.
NCBI ID   WP_011898225.1    Uniprot ID   A4SHE5
Organism   Aeromonas salmonicida subsp. salmonicida strain J409     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2632784..2644298
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GO992_RS12360 (GO992_12360) - 2634362..2635303 (-) 942 WP_042467742.1 branched-chain amino acid transaminase -
  GO992_RS12365 (GO992_12365) ilvM 2635316..2635606 (-) 291 WP_005318216.1 acetolactate synthase 2 small subunit -
  GO992_RS12370 (GO992_12370) ilvG 2635603..2637099 (-) 1497 Protein_2415 acetolactate synthase 2 catalytic subunit -
  GO992_RS23365 - 2637157..2637399 (-) 243 Protein_2416 thiamine pyrophosphate-binding protein -
  GO992_RS12380 (GO992_12380) comM 2637784..2639298 (+) 1515 WP_011898225.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  GO992_RS12385 (GO992_12385) - 2639435..2640314 (+) 880 Protein_2418 acyltransferase -
  GO992_RS12390 (GO992_12390) - 2640473..2640970 (-) 498 WP_005318207.1 DUF523 domain-containing protein -
  GO992_RS12395 (GO992_12395) - 2640967..2641617 (-) 651 WP_011898224.1 NrtR DNA-binding winged helix domain-containing protein -
  GO992_RS12400 (GO992_12400) - 2641692..2642327 (+) 636 WP_017412156.1 nicotinamidase -
  GO992_RS12405 (GO992_12405) pncB 2642417..2643595 (+) 1179 WP_017412157.1 nicotinate phosphoribosyltransferase -

Sequence

Protein


Download         Length: 504 a.a.        Molecular weight: 54679.59 Da        Isoelectric Point: 7.4493

>NTDB_id=413076 GO992_RS12380 WP_011898225.1 2637784..2639298(+) (comM) [Aeromonas salmonicida subsp. salmonicida strain J409]
MSLAVVYSRASLGIAAPQVTVEVHLSNGLPAFNMVGLPETSVKESRDRVRSALLNGNFEFPSKHITVNLAPADLPKEGGR
FDLAIAIGILAASKQIPAKYLLDHEFLGELALTGEIRPVLGVLPAVLACRDAGRTLLVPRENGPEASLIQDAEVRTAHQL
LAVTAWLAGQYELPLPEPQTTDSLPDVPDLQDVIGQSQAKRALEIAAAGSHNLLFIGPPGTGKSMLASRLPGILPPLSEQ
EAQQTAAIHSIGGLTPRAGHWHHRPYRTPHHSASAVALVGGGSHPRPGEISLAHNGVLFLDELPEFERKVLDSLREPLET
GHITISRAARQVDFPARFQLVGAMNPSPCGHYGDGQTRSSPDQILRYLGKLSGPFLDRFDLTVEVPLLPKGSLTGKAERG
ESSQQIRDRVLAARERMLSRNGKLNNLLDSREIEDICRLSPQDAEFLENAIQKLGLSIRAWHRILRVSRTIADLAGRPAI
EKDHLIEALGYRAMDRLLSRLRSG

Nucleotide


Download         Length: 1515 bp        

>NTDB_id=413076 GO992_RS12380 WP_011898225.1 2637784..2639298(+) (comM) [Aeromonas salmonicida subsp. salmonicida strain J409]
ATGTCATTAGCTGTGGTTTATAGCCGTGCCAGCCTGGGGATAGCGGCGCCGCAAGTCACGGTGGAAGTTCACCTCTCCAA
CGGTCTGCCCGCCTTCAACATGGTGGGATTGCCGGAAACCTCGGTGAAGGAATCCCGGGATCGGGTGCGCAGTGCCCTGC
TAAACGGCAATTTCGAGTTCCCGAGCAAACACATCACGGTCAATCTGGCCCCCGCCGACCTGCCCAAGGAGGGAGGCCGT
TTCGATCTGGCTATCGCCATCGGCATTCTCGCTGCTTCCAAGCAGATACCGGCAAAATACCTGCTCGATCACGAATTTTT
AGGGGAGTTGGCCCTGACCGGCGAGATCCGTCCCGTGCTCGGGGTGCTGCCCGCCGTGCTCGCCTGCCGCGATGCGGGGC
GCACTCTGCTGGTACCGAGAGAAAATGGCCCCGAAGCCTCCCTCATTCAGGATGCCGAGGTGCGTACCGCCCACCAGCTG
CTGGCCGTCACCGCCTGGCTGGCAGGCCAATATGAGCTGCCCCTGCCGGAGCCCCAGACCACGGACTCCCTGCCCGATGT
ACCGGATCTGCAGGATGTGATCGGCCAGTCACAGGCCAAGCGGGCATTGGAGATCGCTGCCGCCGGCAGCCACAATCTGC
TGTTCATAGGCCCGCCTGGTACCGGCAAGAGCATGCTGGCCAGCCGTTTGCCCGGCATCTTGCCACCCCTGAGCGAGCAG
GAGGCGCAGCAGACCGCCGCCATCCACTCCATCGGCGGCCTGACCCCGCGCGCCGGTCACTGGCACCACAGACCCTATCG
CACACCCCATCACAGTGCCTCAGCCGTGGCCCTGGTGGGTGGTGGCAGCCATCCCAGACCCGGCGAAATATCCTTGGCCC
ACAACGGGGTACTCTTTCTCGACGAGCTGCCGGAGTTCGAGCGCAAGGTACTCGACTCTCTGCGCGAACCGCTGGAGACG
GGCCACATCACCATCAGCCGCGCCGCCCGTCAGGTGGATTTTCCCGCCCGCTTCCAGCTGGTGGGCGCCATGAACCCCAG
CCCCTGCGGCCACTATGGCGACGGCCAGACCCGCTCCAGCCCGGATCAGATATTGCGCTATCTCGGCAAGCTCTCCGGCC
CCTTCCTCGATCGCTTCGACCTGACGGTAGAGGTGCCGCTGCTGCCCAAGGGCAGCCTCACCGGCAAGGCGGAGCGGGGG
GAATCGAGCCAGCAAATCCGCGATCGGGTGCTGGCGGCGCGGGAGCGAATGCTGAGCCGCAATGGCAAGCTCAACAATCT
CCTTGATAGTCGTGAAATCGAAGATATTTGCCGATTATCGCCGCAAGATGCCGAGTTTTTGGAGAATGCCATCCAGAAGC
TGGGACTCAGCATCCGGGCCTGGCACCGCATACTGCGGGTGTCACGCACCATAGCCGATCTGGCGGGGCGACCTGCGATC
GAGAAGGATCATCTGATCGAGGCGCTCGGCTACAGGGCCATGGACAGGCTGCTGTCGCGGCTGCGCAGCGGCTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-390)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A4SHE5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

63.147

99.603

0.629
  comM Haemophilus influenzae Rd KW20

61.66

100

0.619
  comM Vibrio campbellii strain DS40M4

62.151

99.603

0.619
  comM Glaesserella parasuis strain SC1401

60.158

100

0.605
  comM Legionella pneumophila str. Paris

50.992

100

0.51
  comM Legionella pneumophila strain ERS1305867

50.992

100

0.51
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.169

100

0.466

Multiple sequence alignment