Detailed information
Bioinformatically predicted
Overview
| Name | comEA | Type | Machinery gene |
| Locus tag | GTF72_RS04755 | Genome accession | NZ_CP047295 |
| Coordinates | 1015650..1015961 (+) | Length | 103 a.a. |
| NCBI ID | WP_001166105.1 | Uniprot ID | Q9KQT1 |
| Organism | Vibrio cholerae C6706 | ||
| Function | dsDNA binding (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1010650..1020961
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GTF72_RS04740 (GTF72_04740) | lon | 1010687..1013047 (+) | 2361 | WP_001047611.1 | endopeptidase La | - |
| GTF72_RS04745 (GTF72_04745) | - | 1013231..1013503 (+) | 273 | WP_001044516.1 | HU family DNA-binding protein | - |
| GTF72_RS04750 (GTF72_04750) | ppiD | 1013656..1015515 (+) | 1860 | WP_000969331.1 | peptidylprolyl isomerase | - |
| GTF72_RS04755 (GTF72_04755) | comEA | 1015650..1015961 (+) | 312 | WP_001166105.1 | ComEA family DNA-binding protein | Machinery gene |
| GTF72_RS04760 (GTF72_04760) | cmk | 1016144..1016821 (+) | 678 | WP_000094752.1 | (d)CMP kinase | - |
| GTF72_RS04765 (GTF72_04765) | rpsA | 1016930..1018600 (+) | 1671 | WP_000140318.1 | 30S ribosomal protein S1 | - |
| GTF72_RS04770 (GTF72_04770) | ihfB | 1018888..1019166 (+) | 279 | WP_000167341.1 | integration host factor subunit beta | - |
| GTF72_RS04775 (GTF72_04775) | - | 1019305..1019586 (+) | 282 | WP_000691492.1 | LapA family protein | - |
| GTF72_RS04780 (GTF72_04780) | lapB | 1019598..1020767 (+) | 1170 | WP_000889971.1 | lipopolysaccharide assembly protein LapB | - |
Sequence
Protein
Download Length: 103 a.a. Molecular weight: 10966.78 Da Isoelectric Point: 5.0506
>NTDB_id=412277 GTF72_RS04755 WP_001166105.1 1015650..1015961(+) (comEA) [Vibrio cholerae C6706]
MQIKTKIVTLFLSLCLPTLPLLANAEETAPAAQVEEGIVITVNINTASAEELATLLKGIGLKKAQAIVDYREANGPFTHI
DDLTNVKGIGEATVRNNAARILL
MQIKTKIVTLFLSLCLPTLPLLANAEETAPAAQVEEGIVITVNINTASAEELATLLKGIGLKKAQAIVDYREANGPFTHI
DDLTNVKGIGEATVRNNAARILL
Nucleotide
Download Length: 312 bp
>NTDB_id=412277 GTF72_RS04755 WP_001166105.1 1015650..1015961(+) (comEA) [Vibrio cholerae C6706]
ATGCAAATCAAAACCAAAATAGTGACACTGTTTCTTTCTCTCTGCCTGCCGACATTACCGTTACTGGCCAATGCCGAGGA
AACGGCACCCGCTGCGCAGGTAGAAGAAGGTATTGTGATCACTGTCAATATTAATACCGCTTCTGCAGAAGAGCTGGCGA
CGTTACTCAAAGGCATCGGGCTTAAGAAAGCTCAGGCCATTGTCGATTATCGAGAAGCCAACGGTCCTTTTACTCATATC
GATGATCTGACGAATGTGAAAGGGATTGGTGAAGCGACAGTGCGCAACAATGCCGCAAGGATCTTGTTATAA
ATGCAAATCAAAACCAAAATAGTGACACTGTTTCTTTCTCTCTGCCTGCCGACATTACCGTTACTGGCCAATGCCGAGGA
AACGGCACCCGCTGCGCAGGTAGAAGAAGGTATTGTGATCACTGTCAATATTAATACCGCTTCTGCAGAAGAGCTGGCGA
CGTTACTCAAAGGCATCGGGCTTAAGAAAGCTCAGGCCATTGTCGATTATCGAGAAGCCAACGGTCCTTTTACTCATATC
GATGATCTGACGAATGTGAAAGGGATTGGTGAAGCGACAGTGCGCAACAATGCCGCAAGGATCTTGTTATAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comEA | Vibrio cholerae C6706 |
100 |
100 |
1 |
| comEA | Vibrio cholerae strain A1552 |
100 |
100 |
1 |
| comEA | Vibrio parahaemolyticus RIMD 2210633 |
62.766 |
91.262 |
0.573 |
| comEA | Vibrio campbellii strain DS40M4 |
58.333 |
93.204 |
0.544 |
| comE1/comEA | Haemophilus influenzae Rd KW20 |
40.541 |
100 |
0.437 |