Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   GSR16_RS18480 Genome accession   NZ_CP047241
Coordinates   3985837..3986967 (+) Length   376 a.a.
NCBI ID   WP_159879936.1    Uniprot ID   -
Organism   Aquitalea denitrificans strain 5YN1-3     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3980837..3991967
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GSR16_RS18460 - 3982115..3982366 (-) 252 WP_089082795.1 YfhL family 4Fe-4S dicluster ferredoxin -
  GSR16_RS18465 rsmD 3982466..3983026 (-) 561 WP_159879930.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  GSR16_RS18470 - 3983105..3984301 (-) 1197 WP_240902533.1 M16 family metallopeptidase -
  GSR16_RS18475 - 3984402..3985730 (-) 1329 WP_240902534.1 M16 family metallopeptidase -
  GSR16_RS18480 pilA 3985837..3986967 (+) 1131 WP_159879936.1 signal recognition particle-docking protein FtsY Machinery gene
  GSR16_RS18485 ftsE 3987042..3987695 (+) 654 WP_159879938.1 cell division ATP-binding protein FtsE -
  GSR16_RS18490 ftsX 3987692..3988600 (+) 909 WP_159879940.1 permease-like cell division protein FtsX -
  GSR16_RS18495 rpoH 3988801..3989664 (+) 864 WP_159879942.1 RNA polymerase sigma factor RpoH -
  GSR16_RS18500 - 3989799..3991586 (-) 1788 WP_159879944.1 PglL family O-oligosaccharyltransferase -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 40085.19 Da        Isoelectric Point: 5.1763

>NTDB_id=411802 GSR16_RS18480 WP_159879936.1 3985837..3986967(+) (pilA) [Aquitalea denitrificans strain 5YN1-3]
MFSFFKKKPKPVETPVIEPQTEASSAPLVESSPPAPTDIATPIPATDPVATPVADIAASAPQAEVDEPEEAPARKLSWTE
RLKAGLSKTRDKLGKSLAGLFGGGKIDEDLYEELETVLLTADMGMDATVHLLQDVRERVSLKGLKDGSELKGALKDSLNQ
LIHPLEKPLDVSGKKPFVIMMAGVNGAGKTTSIGKLAKYYQLQGKSVLLAAGDTFRAAAREQLMAWGERNNVTVIAQQGG
DAAAVCYDAIQAAIARDIDIVLADTAGRLPTQLHLMEEIKKVKRVIQKALPDAPHEVILVLDANIGQNAISQVKVFDDAL
GLTGLILTKLDGTAKGGVIAAIAKQRPIPLRFVGVGESIDDLRPFSSKDYVDALFD

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=411802 GSR16_RS18480 WP_159879936.1 3985837..3986967(+) (pilA) [Aquitalea denitrificans strain 5YN1-3]
ATGTTTAGTTTCTTCAAGAAAAAACCAAAACCGGTTGAAACCCCGGTCATCGAACCCCAGACCGAGGCCTCCAGCGCACC
ACTCGTCGAGTCAAGTCCGCCAGCCCCAACTGACATTGCCACCCCTATTCCGGCGACCGATCCTGTTGCCACGCCAGTCG
CCGACATTGCTGCTTCAGCACCGCAAGCTGAAGTCGACGAGCCTGAGGAGGCTCCGGCCAGAAAGCTAAGCTGGACCGAA
CGCCTGAAGGCTGGCCTTTCGAAAACCCGGGACAAACTGGGCAAATCGCTGGCTGGCCTGTTTGGAGGCGGCAAGATCGA
TGAAGATCTGTACGAGGAGCTGGAAACTGTCCTGCTGACCGCCGATATGGGCATGGATGCAACGGTACACCTGCTGCAGG
ATGTACGCGAACGCGTCAGCCTCAAAGGGCTGAAGGATGGCAGCGAGCTGAAAGGCGCGCTGAAGGACTCGCTCAACCAG
CTGATTCATCCCTTGGAAAAGCCGCTGGATGTCAGCGGCAAAAAACCCTTTGTCATCATGATGGCCGGGGTAAACGGTGC
TGGCAAGACCACCTCCATCGGCAAGCTGGCTAAATACTATCAACTGCAAGGCAAGAGTGTGCTGCTGGCTGCTGGCGACA
CCTTCCGCGCCGCCGCGCGCGAGCAGCTGATGGCTTGGGGCGAGCGCAATAATGTCACCGTGATTGCCCAACAAGGCGGC
GATGCCGCTGCCGTATGCTACGACGCCATTCAGGCCGCCATTGCACGTGACATCGATATCGTGCTGGCGGATACCGCCGG
CCGCCTGCCGACCCAGCTGCACCTGATGGAAGAAATCAAGAAGGTGAAGCGTGTCATCCAGAAGGCCCTGCCGGATGCAC
CGCATGAAGTCATTCTGGTGCTGGATGCCAATATCGGTCAGAACGCCATCAGCCAAGTGAAAGTATTTGATGATGCACTG
GGCCTGACCGGCCTGATCCTGACCAAACTGGATGGTACGGCCAAGGGTGGCGTCATTGCCGCCATTGCCAAGCAACGGCC
GATTCCGCTACGGTTTGTCGGGGTTGGCGAAAGCATTGACGATCTGCGCCCGTTCAGCAGCAAGGATTACGTCGACGCTC
TGTTCGACTGA

Domains

Predicted by InterproScan.

SRP54-type protein, GTPase domain (SRP54)

(176-375)

SRP54-type protein, helical bundle domain (SRP54_N)

(91-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

61.962

100

0.689

Multiple sequence alignment