Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   GSR16_RS17150 Genome accession   NZ_CP047241
Coordinates   3728489..3728851 (-) Length   120 a.a.
NCBI ID   WP_159879540.1    Uniprot ID   -
Organism   Aquitalea denitrificans strain 5YN1-3     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3723489..3733851
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GSR16_RS17135 pilF 3723719..3725431 (-) 1713 WP_159879533.1 type IV-A pilus assembly ATPase PilB Machinery gene
  GSR16_RS17140 - 3725615..3726697 (-) 1083 WP_159879535.1 porin -
  GSR16_RS17145 - 3727039..3728430 (+) 1392 WP_159879538.1 cryptochrome/photolyase family protein -
  GSR16_RS17150 comE 3728489..3728851 (-) 363 WP_159879540.1 ComEA family DNA-binding protein Machinery gene
  GSR16_RS17155 - 3728899..3729720 (-) 822 WP_159879542.1 cytochrome C assembly family protein -
  GSR16_RS17160 ffh 3729829..3731184 (+) 1356 WP_159879544.1 signal recognition particle protein -
  GSR16_RS17165 - 3731232..3732134 (+) 903 WP_159879546.1 ATP-grasp domain-containing protein -
  GSR16_RS17170 purB 3732202..3733572 (+) 1371 WP_159879548.1 adenylosuccinate lyase -

Sequence

Protein


Download         Length: 120 a.a.        Molecular weight: 12395.73 Da        Isoelectric Point: 10.7692

>NTDB_id=411799 GSR16_RS17150 WP_159879540.1 3728489..3728851(-) (comE) [Aquitalea denitrificans strain 5YN1-3]
MKKLFALLVGMFFVCASALAAININTATQQQLETLNGIGPVKAKAIIDYRSKNGAFKSVDDLKKVSGIGDKTLEKLKKDI
SISGASSVAPVATAPAAKPAVPAGKPMAAKKEASKPVAKK

Nucleotide


Download         Length: 363 bp        

>NTDB_id=411799 GSR16_RS17150 WP_159879540.1 3728489..3728851(-) (comE) [Aquitalea denitrificans strain 5YN1-3]
ATGAAAAAACTGTTTGCCTTGCTTGTTGGTATGTTTTTTGTCTGCGCATCGGCACTGGCCGCCATCAATATCAATACTGC
AACCCAGCAGCAACTGGAGACGCTGAATGGTATCGGTCCGGTCAAGGCCAAGGCCATCATCGACTACCGTAGTAAGAATG
GCGCTTTCAAGTCGGTTGATGATTTGAAGAAGGTTTCAGGTATTGGTGACAAAACGCTGGAAAAACTGAAGAAGGACATT
AGTATCAGTGGTGCCAGCTCTGTCGCTCCGGTCGCCACCGCTCCGGCAGCCAAGCCCGCGGTTCCTGCTGGTAAGCCGAT
GGCGGCCAAGAAAGAGGCCTCCAAGCCGGTTGCCAAGAAGTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(21-80)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

58.095

87.5

0.508
  comE Neisseria gonorrhoeae MS11

58.095

87.5

0.508
  comE Neisseria gonorrhoeae MS11

58.095

87.5

0.508
  comE Neisseria gonorrhoeae MS11

58.095

87.5

0.508
  Cj0011c Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

56.627

69.167

0.392

Multiple sequence alignment