Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   GSR16_RS17190 Genome accession   NZ_CP047241
Coordinates   3735442..3736941 (-) Length   499 a.a.
NCBI ID   WP_159879554.1    Uniprot ID   -
Organism   Aquitalea denitrificans strain 5YN1-3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3730442..3741941
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GSR16_RS17165 - 3731232..3732134 (+) 903 WP_159879546.1 ATP-grasp domain-containing protein -
  GSR16_RS17170 purB 3732202..3733572 (+) 1371 WP_159879548.1 adenylosuccinate lyase -
  GSR16_RS17180 - 3733970..3734587 (-) 618 WP_159879550.1 thiol:disulfide interchange protein DsbA/DsbL -
  GSR16_RS17185 - 3734613..3735368 (-) 756 WP_159879552.1 SPOR domain-containing protein -
  GSR16_RS17190 comM 3735442..3736941 (-) 1500 WP_159879554.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  GSR16_RS17195 - 3736948..3737235 (-) 288 WP_159879556.1 accessory factor UbiK family protein -
  GSR16_RS17200 glnK 3737504..3737842 (+) 339 WP_089083799.1 P-II family nitrogen regulator -
  GSR16_RS17205 - 3737873..3739183 (+) 1311 WP_159879558.1 ammonium transporter -
  GSR16_RS17210 metK 3739339..3740508 (-) 1170 WP_159879560.1 methionine adenosyltransferase -
  GSR16_RS17215 - 3740586..3741479 (+) 894 WP_159879562.1 lysophospholipid acyltransferase family protein -

Sequence

Protein


Download         Length: 499 a.a.        Molecular weight: 53187.91 Da        Isoelectric Point: 7.4752

>NTDB_id=411800 GSR16_RS17190 WP_159879554.1 3735442..3736941(-) (comM) [Aquitalea denitrificans strain 5YN1-3]
MSLALVASRALAGLHAPEVAVEVHLANGLPQFTIVGLPDTEVKESRDRVRAAIINSGFEFPARRITVNLAPADLPKGSGR
FDLPIAIGILAAAGQIQCPQLTDYEFAGELALSGQLRAIRGALAMSCQASRAGKFFILPRESAAEAALVRSGQVYAADSL
LQVCAHLNGVQPCDTAVVNLADNSAVYPDLADVKGQMAARHALEVAAAGGHSLLFIGPPGTGKSMLASRLPGILPEMSED
EALAAATIQSLGTQGFRPEQWRQRPFRSPHHTASAVALVGGGSDPRPGEVSLAHHGVLFLDELPEFERKVLEVLREPLES
RVINISRASRQACFPADFQLVAAMNPCPCGYLGHASGRCQCTPEQIARYAGKLSGPLLDRIDMHVQVPALAAGDLATASP
GEGSQQIRLRVQQARDRQLQRQGCCNARLSGAELEQHAAADQTSLVLLGEALDRLGLSARSYHRILRIARTIADMDGEHR
LGRQHMLQAIQLRRSGLAL

Nucleotide


Download         Length: 1500 bp        

>NTDB_id=411800 GSR16_RS17190 WP_159879554.1 3735442..3736941(-) (comM) [Aquitalea denitrificans strain 5YN1-3]
ATGTCATTGGCTCTTGTTGCAAGTCGTGCCCTGGCCGGCTTGCACGCTCCAGAAGTGGCGGTGGAGGTCCATCTGGCCAA
TGGACTGCCGCAGTTCACCATCGTTGGCTTACCCGATACCGAGGTTAAAGAGAGCCGTGACCGGGTACGTGCCGCCATCA
TCAACTCCGGTTTTGAATTTCCGGCGCGCCGTATCACCGTCAATCTGGCTCCCGCTGATCTGCCTAAGGGCTCTGGCCGT
TTTGACCTTCCCATTGCCATTGGCATACTGGCTGCAGCAGGTCAGATCCAATGTCCCCAGCTGACTGATTATGAATTCGC
AGGAGAATTGGCATTAAGCGGGCAACTGCGTGCCATTCGTGGTGCACTGGCGATGTCCTGCCAAGCCAGTCGTGCCGGGA
AGTTCTTCATTCTTCCTCGCGAAAGCGCGGCAGAGGCGGCATTGGTCAGGTCTGGCCAGGTTTATGCTGCCGATAGCCTG
CTGCAGGTATGCGCCCACCTGAATGGTGTGCAGCCTTGCGATACGGCCGTGGTCAACCTGGCAGATAACTCAGCCGTTTA
TCCGGATCTGGCAGATGTCAAAGGGCAGATGGCAGCACGCCATGCGCTAGAGGTTGCTGCTGCCGGCGGACACAGCCTGC
TTTTCATCGGTCCTCCCGGTACAGGTAAGTCCATGCTTGCGTCCCGCTTGCCCGGAATACTTCCTGAGATGAGTGAGGAC
GAGGCGCTTGCTGCCGCAACGATACAGTCGCTGGGAACGCAGGGTTTCAGGCCGGAGCAATGGCGGCAGCGCCCATTCCG
GTCACCGCACCATACGGCCTCTGCCGTTGCCTTGGTGGGTGGCGGCTCTGATCCGCGCCCCGGTGAAGTCAGTCTGGCTC
ATCATGGCGTACTGTTTCTGGATGAATTGCCAGAGTTTGAACGCAAGGTACTGGAAGTATTGCGTGAACCTTTGGAGTCG
CGAGTAATCAATATTTCCCGAGCCAGCAGGCAAGCCTGCTTTCCTGCAGATTTTCAGCTGGTTGCCGCAATGAACCCATG
TCCTTGTGGTTATCTGGGGCATGCTTCCGGCAGGTGCCAATGTACACCGGAGCAAATAGCCCGCTATGCGGGGAAGTTAT
CAGGTCCGCTGCTTGACCGGATTGATATGCACGTACAGGTCCCAGCCCTGGCGGCAGGGGATTTGGCCACGGCGTCGCCA
GGGGAGGGTAGTCAGCAGATTCGGCTTCGTGTCCAGCAGGCAAGGGATAGGCAGTTGCAGCGGCAGGGTTGTTGTAATGC
CAGGCTGTCTGGGGCCGAGCTAGAGCAGCATGCCGCAGCTGATCAGACTTCGTTGGTGTTGTTGGGAGAGGCGCTGGACC
GTCTTGGACTATCAGCAAGAAGTTATCATCGTATCTTGCGTATTGCCCGTACCATTGCAGATATGGATGGTGAGCACCGT
TTAGGTCGGCAGCACATGCTACAAGCCATTCAGTTAAGACGTAGCGGTTTGGCTTTGTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-392)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-141)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

53.6

100

0.537
  comM Vibrio campbellii strain DS40M4

52.6

100

0.527
  comM Glaesserella parasuis strain SC1401

52.305

100

0.523
  comM Haemophilus influenzae Rd KW20

51.497

100

0.517
  comM Legionella pneumophila str. Paris

49.801

100

0.501
  comM Legionella pneumophila strain ERS1305867

49.801

100

0.501
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.219

100

0.455

Multiple sequence alignment