Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   GSF13_RS06815 Genome accession   NZ_CP047240
Coordinates   377791..379311 (+) Length   506 a.a.
NCBI ID   WP_211867576.1    Uniprot ID   -
Organism   Pseudoalteromonas sp. M8     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 372791..384311
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GSF13_RS06810 (GSF13_06820) - 377159..377773 (+) 615 WP_039492969.1 trimeric intracellular cation channel family protein -
  GSF13_RS06815 (GSF13_06825) comM 377791..379311 (+) 1521 WP_211867576.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  GSF13_RS06820 (GSF13_06830) - 379354..380049 (-) 696 WP_010605961.1 response regulator transcription factor -
  GSF13_RS06825 (GSF13_06835) - 380275..382728 (-) 2454 WP_211867578.1 prolyl oligopeptidase family serine peptidase -
  GSF13_RS06830 (GSF13_06840) - 382895..384022 (+) 1128 WP_211867580.1 hemolysin family protein -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 54677.67 Da        Isoelectric Point: 8.5615

>NTDB_id=411759 GSF13_RS06815 WP_211867576.1 377791..379311(+) (comM) [Pseudoalteromonas sp. M8]
MSLARVFTRAQVGITAPEVIVEVHLSNGLPAFSIVGLPETSVKEAKERVRSALVNAGFLFPEQRITVNLAPADLPKDGGR
FDFAIALGVLVASGQLDSHAIADKEFYGELALNGELRTVTAILPSVIAAAKEGRTAYLPTGNDAVASLAADANRVAISCL
RTAWLGLSGQQSLRFNQLYPDDLNIQASGGSLLDMAEVKGQEGAKRVLEIAAAGGHNVLFLGPPGTGKSMLAQRLPTIMP
LMTDNQALETASIYSILGKTISQSNWKTRPFRAPHHTCSAVALVGGSSNPKPGEISLSNNGVLFLDELPEFDRKVLDSLR
EPMETGMVTISRAARQVDYPANFQLIAALNPSPTGCYTDKRASPDQVLRYLAKISGPFLDRIDLQVELPRLKTEELQSQS
NGESSATIRARVEQAYKTALARQGKCNDQLSVKELNHICYLADAERLFLAKAAEKLKLSPRSYHRIIKVARTIADLSSTP
NIGLSHLKEALSYRALERLLGQLTQY

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=411759 GSF13_RS06815 WP_211867576.1 377791..379311(+) (comM) [Pseudoalteromonas sp. M8]
ATGTCTTTAGCAAGAGTCTTCACTCGAGCACAAGTTGGTATTACCGCACCCGAGGTAATTGTTGAGGTGCACCTTAGCAA
TGGTTTACCTGCCTTTAGTATTGTTGGATTACCCGAAACCTCAGTTAAAGAAGCCAAAGAACGCGTCCGTAGTGCGCTTG
TTAATGCTGGCTTTTTATTTCCAGAACAGCGTATCACAGTAAACTTAGCACCAGCAGATCTACCCAAAGACGGTGGCCGC
TTTGACTTTGCAATCGCACTCGGTGTTCTTGTCGCATCAGGGCAGTTAGATAGCCATGCTATTGCTGATAAAGAGTTTTA
TGGTGAGCTTGCGTTAAATGGTGAGCTGAGGACGGTCACTGCGATTTTGCCATCTGTTATTGCAGCAGCGAAGGAGGGGC
GAACTGCTTACCTACCTACTGGTAACGATGCAGTTGCGAGCCTTGCCGCTGATGCTAATCGTGTTGCTATAAGCTGCTTG
CGTACAGCATGGTTAGGCTTAAGCGGCCAGCAATCACTTAGGTTTAATCAACTCTACCCAGACGATTTAAATATACAAGC
TTCAGGTGGGAGCTTGCTGGATATGGCTGAAGTGAAAGGGCAAGAGGGGGCGAAGCGAGTACTAGAAATAGCTGCGGCAG
GTGGGCATAACGTTTTATTTCTTGGTCCTCCGGGCACTGGAAAATCGATGCTTGCTCAGCGCCTGCCCACGATAATGCCA
TTAATGACGGATAATCAGGCGTTAGAAACGGCTTCTATCTATTCCATACTGGGAAAAACAATCAGCCAATCAAACTGGAA
AACAAGGCCTTTTAGAGCTCCACATCATACTTGCTCTGCGGTAGCCTTGGTTGGAGGCTCATCGAACCCTAAGCCAGGGG
AGATATCATTGTCAAATAATGGTGTTCTATTTTTGGACGAGTTACCAGAATTTGATAGGAAGGTACTGGATTCATTACGT
GAGCCGATGGAAACGGGCATGGTAACGATTTCGCGCGCAGCTCGGCAAGTTGATTACCCTGCAAACTTTCAACTGATCGC
AGCATTAAACCCCAGTCCTACAGGTTGTTACACTGACAAAAGAGCGTCTCCAGATCAAGTATTGCGCTATTTGGCTAAGA
TTTCAGGCCCATTTTTAGACCGAATAGATCTACAGGTAGAATTACCTCGTCTAAAAACAGAAGAGCTACAATCCCAGAGT
AATGGAGAGTCTAGCGCGACAATAAGGGCTAGGGTGGAACAGGCCTATAAAACAGCTTTAGCACGTCAGGGAAAATGTAA
CGACCAACTGAGTGTAAAAGAGCTAAATCATATCTGCTATCTTGCTGATGCTGAACGCTTATTTCTAGCAAAAGCAGCAG
AAAAACTAAAGCTATCACCACGTTCATATCATCGAATAATCAAGGTTGCACGTACCATTGCAGATCTGAGCTCTACACCT
AATATTGGCTTATCACATTTAAAGGAAGCGCTTAGTTATCGCGCGTTGGAGAGGTTGTTAGGTCAGTTAACACAGTATTA
G

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(194-395)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-494)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

53.649

100

0.538
  comM Haemophilus influenzae Rd KW20

53.452

100

0.536
  comM Vibrio cholerae strain A1552

52.663

100

0.528
  comM Glaesserella parasuis strain SC1401

52.456

100

0.528
  comM Legionella pneumophila str. Paris

50

98.814

0.494
  comM Legionella pneumophila strain ERS1305867

50

98.814

0.494
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.47

100

0.441

Multiple sequence alignment