Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   GQ674_RS18285 Genome accession   NZ_CP047135
Coordinates   4081677..4083179 (+) Length   500 a.a.
NCBI ID   WP_159498203.1    Uniprot ID   A0A6P1EK70
Organism   Stenotrophomonas sp. 364     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4076677..4088179
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GQ674_RS18260 (GQ674_18260) - 4077723..4078628 (-) 906 WP_201290179.1 aspartyl/asparaginyl beta-hydroxylase domain-containing protein -
  GQ674_RS18265 (GQ674_18265) - 4079201..4079857 (+) 657 WP_159498200.1 RIO1 family regulatory kinase/ATPase -
  GQ674_RS18270 (GQ674_18270) - 4079938..4080276 (-) 339 WP_038685739.1 P-II family nitrogen regulator -
  GQ674_RS18275 (GQ674_18275) - 4080403..4080663 (+) 261 WP_159498201.1 accessory factor UbiK family protein -
  GQ674_RS18280 (GQ674_18280) yidA 4080675..4081514 (-) 840 WP_159498202.1 sugar-phosphatase -
  GQ674_RS18285 (GQ674_18285) comM 4081677..4083179 (+) 1503 WP_159498203.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  GQ674_RS18290 (GQ674_18290) - 4083338..4084339 (+) 1002 WP_159498204.1 TIGR03571 family LLM class oxidoreductase -
  GQ674_RS18295 (GQ674_18295) - 4084392..4085393 (+) 1002 WP_159498205.1 aldo/keto reductase -
  GQ674_RS18300 (GQ674_18300) - 4085654..4085923 (+) 270 WP_159498206.1 helix-turn-helix domain-containing protein -
  GQ674_RS18305 (GQ674_18305) - 4085920..4087302 (+) 1383 WP_236546123.1 HipA domain-containing protein -
  GQ674_RS18310 (GQ674_18310) - 4087343..4088014 (+) 672 WP_159498207.1 VOC family protein -

Sequence

Protein


Download         Length: 500 a.a.        Molecular weight: 53397.97 Da        Isoelectric Point: 7.8968

>NTDB_id=410931 GQ674_RS18285 WP_159498203.1 4081677..4083179(+) (comM) [Stenotrophomonas sp. 364]
MSLALVHSRARAGVNAPAVRIEVLLSGGLPHTQMVGLPETAVRESRDRVRAAIVCSQFEFPQRRITINLAPADLPKEGGR
FDLAIALGILAASGQIDTQVLSRYEFLGELALTGELRGVNGVLPAALAAARLGRTLIVPPENAAEAGLAGHADVRVARTL
LEACAGLSERTLPKALPADVASLPMPDLRDVRGQPQARRALEVAAAGGHHLLLIGTPGCGKTLLASRLPGILPDATELEA
LETATVASCTGGGIDTARWRQRPYRSPHHTASAVSLVGGGSFPRPGEISLAHNGVLFLDELPEWSRHALEVLREPLESGQ
VVVARASRSEAFPARFQLVAAMNPCPCGWAGDRSGRCRCAVDGIQRYRGRVSGPLLDRIDLHVEVPRLEPHELRDDTPYG
EDSSTVRARVVAAREVQLGRSEKANAQLQPGELAQHCRLSTADRQLLEDAVERLQLSARSMHRILRVARTVADLEGSEGI
RTAHVAEAIGYRQLDRGGGA

Nucleotide


Download         Length: 1503 bp        

>NTDB_id=410931 GQ674_RS18285 WP_159498203.1 4081677..4083179(+) (comM) [Stenotrophomonas sp. 364]
ATGAGCCTGGCGCTGGTCCACAGCCGTGCCCGCGCAGGCGTCAACGCGCCTGCCGTCCGCATTGAAGTACTGCTCTCCGG
CGGCCTGCCGCACACCCAGATGGTGGGCCTGCCGGAAACCGCCGTGCGCGAATCGCGGGACCGCGTGCGTGCCGCCATCG
TCTGTTCGCAATTCGAATTTCCACAGCGCCGCATCACCATCAACCTGGCCCCGGCCGACCTGCCCAAGGAAGGCGGACGC
TTTGATCTGGCCATTGCGCTGGGCATCCTCGCCGCCAGCGGGCAGATCGATACGCAGGTCTTGTCGCGCTATGAATTCCT
GGGCGAACTTGCGCTGACCGGTGAGCTACGCGGGGTGAACGGCGTGCTGCCCGCCGCGCTTGCCGCCGCCCGGCTCGGTC
GCACCCTGATCGTCCCACCGGAAAACGCCGCCGAAGCCGGCTTGGCCGGGCACGCGGATGTGCGCGTGGCGCGGACACTG
CTGGAAGCATGCGCTGGTCTGAGTGAGCGCACGTTGCCCAAGGCCCTGCCTGCCGACGTCGCCAGCCTGCCCATGCCCGA
CCTGCGCGACGTACGCGGCCAACCGCAGGCACGGCGAGCGCTCGAGGTAGCCGCTGCCGGGGGCCACCACCTGTTGCTGA
TCGGCACGCCGGGCTGCGGCAAGACGCTGCTGGCCTCGCGGTTGCCCGGCATCCTGCCCGACGCCACCGAGCTGGAGGCA
CTGGAGACCGCCACGGTGGCGTCCTGCACCGGCGGCGGCATCGACACCGCGCGTTGGCGGCAGCGCCCGTACCGATCACC
GCACCACACCGCCAGCGCGGTGTCGCTGGTGGGCGGCGGCTCGTTCCCGCGTCCGGGCGAAATATCGCTGGCACACAACG
GCGTGCTGTTCCTGGATGAACTGCCCGAGTGGAGCCGGCACGCCCTGGAGGTACTGCGCGAGCCATTGGAGTCCGGCCAG
GTGGTGGTCGCCCGCGCCTCACGCAGTGAAGCATTTCCCGCACGCTTCCAGCTGGTGGCGGCGATGAACCCCTGCCCCTG
CGGCTGGGCCGGCGACCGGAGCGGACGCTGTCGCTGCGCCGTGGATGGCATCCAGCGCTATCGCGGTCGCGTGTCCGGCC
CGCTGCTGGACCGCATCGACCTGCATGTGGAGGTGCCGCGGTTGGAGCCGCACGAACTCCGCGATGACACGCCGTACGGC
GAAGACAGCAGCACGGTGCGGGCGCGGGTGGTGGCAGCGCGCGAGGTGCAGCTGGGCCGCAGCGAGAAGGCCAATGCGCA
GTTGCAGCCCGGCGAGCTGGCGCAGCATTGCCGGCTGTCTACTGCGGATCGGCAACTACTTGAGGATGCGGTCGAACGAC
TGCAGCTGTCCGCGCGGTCGATGCATCGCATTCTTCGCGTGGCGCGGACGGTGGCCGACCTGGAGGGGAGTGAGGGCATT
CGGACGGCGCATGTGGCCGAGGCGATCGGGTATCGCCAGTTGGATCGCGGTGGGGGTGCATGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(187-392)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6P1EK70

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

54.91

99.8

0.548
  comM Vibrio campbellii strain DS40M4

54.108

99.8

0.54
  comM Glaesserella parasuis strain SC1401

53.175

100

0.536
  comM Haemophilus influenzae Rd KW20

52.183

100

0.526
  comM Legionella pneumophila str. Paris

49.105

100

0.494
  comM Legionella pneumophila strain ERS1305867

49.105

100

0.494
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.26

100

0.47

Multiple sequence alignment