Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   GNX18_RS18185 Genome accession   NZ_CP046948
Coordinates   4403496..4404068 (+) Length   190 a.a.
NCBI ID   WP_138236918.1    Uniprot ID   -
Organism   Microbulbifer sp. SH-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4398496..4409068
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GNX18_RS18175 (GNX18_18145) - 4400576..4401979 (+) 1404 WP_205828004.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase -
  GNX18_RS18180 (GNX18_18150) - 4402107..4403279 (+) 1173 WP_138236919.1 MFS transporter -
  GNX18_RS18185 (GNX18_18155) ssb 4403496..4404068 (+) 573 WP_138236918.1 single-stranded DNA-binding protein Machinery gene
  GNX18_RS18190 (GNX18_18160) - 4404119..4404946 (+) 828 WP_240914090.1 sugar nucleotide-binding protein -
  GNX18_RS18195 (GNX18_18165) fabB 4405035..4406258 (-) 1224 WP_166219939.1 beta-ketoacyl-ACP synthase I -
  GNX18_RS18200 (GNX18_18170) fabA 4406320..4406844 (-) 525 WP_138236915.1 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabA -
  GNX18_RS18205 (GNX18_18175) galU 4407114..4407950 (+) 837 WP_166219941.1 UTP--glucose-1-phosphate uridylyltransferase GalU -

Sequence

Protein


Download         Length: 190 a.a.        Molecular weight: 20876.73 Da        Isoelectric Point: 5.0100

>NTDB_id=409611 GNX18_RS18185 WP_138236918.1 4403496..4404068(+) (ssb) [Microbulbifer sp. SH-1]
MARGVNKVILIGNLGGDPETRYLPSGGAVTNVTLATSETWKDKQTGQQQERTEWHRVVFFNRLAEIAGEYLRKGSKVYLE
GSLRTRKWQDKQTGQDRYTTEIVASEMQMLDGRGEQSGGYQQQGGQGGGYQQQGGDYNQGGYQDEYAQGRSAPSPMAPSN
PSSNQPQNRPAGNQAPMGGFDNSFDDDIPF

Nucleotide


Download         Length: 573 bp        

>NTDB_id=409611 GNX18_RS18185 WP_138236918.1 4403496..4404068(+) (ssb) [Microbulbifer sp. SH-1]
ATGGCCAGGGGCGTTAACAAAGTAATTCTGATTGGCAATCTGGGCGGCGACCCGGAAACCCGCTATCTGCCCAGCGGCGG
CGCCGTTACCAATGTCACCCTGGCGACGTCTGAAACCTGGAAAGACAAGCAGACCGGCCAGCAGCAGGAGCGCACCGAGT
GGCACCGCGTGGTGTTCTTCAACCGTCTGGCGGAGATTGCCGGCGAGTACCTGCGCAAGGGCAGCAAGGTCTACCTTGAG
GGCTCTCTGCGCACGCGCAAGTGGCAGGACAAGCAGACCGGCCAGGACCGCTACACCACCGAAATCGTCGCCAGCGAAAT
GCAGATGCTCGACGGCCGCGGTGAGCAGAGCGGCGGCTATCAGCAGCAGGGCGGCCAGGGCGGTGGCTACCAGCAGCAGG
GCGGCGATTATAACCAGGGCGGTTACCAGGACGAATACGCTCAGGGCCGCTCCGCACCTTCTCCCATGGCGCCGTCCAAT
CCTTCTTCAAACCAGCCGCAAAATCGCCCCGCCGGCAACCAGGCACCCATGGGTGGCTTTGATAACAGCTTCGACGACGA
CATTCCCTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-110)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

55.556

99.474

0.553
  ssb Vibrio cholerae strain A1552

54.404

100

0.553
  ssb Neisseria gonorrhoeae MS11

48.404

98.947

0.479
  ssb Neisseria meningitidis MC58

47.872

98.947

0.474

Multiple sequence alignment