Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   GNX18_RS12880 Genome accession   NZ_CP046948
Coordinates   3142924..3144414 (+) Length   496 a.a.
NCBI ID   WP_166218600.1    Uniprot ID   A0A6G8DFL5
Organism   Microbulbifer sp. SH-1     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 3137924..3149414
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GNX18_RS12850 (GNX18_12835) - 3138639..3138851 (-) 213 WP_138237106.1 hypothetical protein -
  GNX18_RS12855 (GNX18_12840) - 3139278..3139616 (-) 339 WP_043319767.1 P-II family nitrogen regulator -
  GNX18_RS12860 (GNX18_12845) - 3139732..3140991 (-) 1260 WP_166218598.1 ammonium transporter -
  GNX18_RS12865 (GNX18_12850) - 3141084..3141422 (-) 339 WP_138237108.1 P-II family nitrogen regulator -
  GNX18_RS12870 (GNX18_12855) - 3141479..3142195 (-) 717 WP_138237109.1 TorF family putative porin -
  GNX18_RS19690 - 3142472..3142861 (+) 390 WP_240914006.1 accessory factor UbiK family protein -
  GNX18_RS12880 (GNX18_12865) comM 3142924..3144414 (+) 1491 WP_166218600.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  GNX18_RS12885 (GNX18_12870) - 3144488..3145024 (-) 537 WP_166218602.1 GNAT family N-acetyltransferase -
  GNX18_RS12890 (GNX18_12875) bla 3145026..3145901 (-) 876 WP_166218604.1 subclass B3 metallo-beta-lactamase -
  GNX18_RS12895 (GNX18_12880) - 3145927..3146430 (-) 504 WP_166218606.1 GNAT family N-acetyltransferase -
  GNX18_RS12900 (GNX18_12885) - 3146455..3146910 (-) 456 WP_166218608.1 YaiI/YqxD family protein -
  GNX18_RS12905 (GNX18_12890) - 3146910..3147143 (-) 234 WP_138237114.1 DUF3565 domain-containing protein -
  GNX18_RS12910 (GNX18_12895) - 3147244..3148644 (-) 1401 WP_166218610.1 hypothetical protein -

Sequence

Protein


Download         Length: 496 a.a.        Molecular weight: 53233.95 Da        Isoelectric Point: 7.4111

>NTDB_id=409609 GNX18_RS12880 WP_166218600.1 3142924..3144414(+) (comM) [Microbulbifer sp. SH-1]
MSLSITYARAQLGIHAPLVTVETHLANGLPAFNIVGLPEAAVRESRDRVRSAIVNSHFEFPQRRITVNLAPADLPKAGGR
YDLAIAIGVLAASGQVPGDTLEQYEFIGELALSGSLRPIPGALPAAMACGDCDRTLVISSESAAEAALIGTPIKAASSLL
QVCAQLHGREPLPDAVGDETQEEALCADLADVRGQLKARRALEVAAAGSHNLLFYGPPGTGKTMLASRLPGILPPLTERE
LIEVAALYSSAGLARIRQRPFRAPHHSASPTALVGGGSDPRPGEISLAHRGVLFLDEMPEFPRSALEILREPLENGEVRI
SRARAQVTFPADFQLVAAMNPCPCGYLGETRCRCTPDQIHRYRNKLSGPLLDRIDMQVEVASMSAAQLQESPPGEKSATV
RERVRTAREIQLQRQGKINGELKGRELDEHCSLGKTESALLRASVEKLGLSARSYHRVLKVARTLADLCGQENIGTSQIA
EALAYRNLDRKPIATV

Nucleotide


Download         Length: 1491 bp        

>NTDB_id=409609 GNX18_RS12880 WP_166218600.1 3142924..3144414(+) (comM) [Microbulbifer sp. SH-1]
GTGAGCCTATCCATCACCTATGCCCGCGCACAACTGGGCATTCACGCGCCATTGGTCACCGTGGAAACCCATCTCGCCAA
CGGGCTGCCGGCATTCAATATTGTCGGATTGCCGGAGGCCGCGGTGCGCGAGAGCCGCGACCGGGTGCGCAGCGCCATCG
TCAACAGTCATTTCGAGTTCCCCCAGCGGCGCATCACCGTCAACCTGGCTCCGGCGGACCTGCCCAAGGCCGGCGGTCGT
TACGACCTCGCCATCGCAATCGGCGTCCTCGCGGCCTCCGGGCAGGTGCCCGGGGATACACTTGAACAGTATGAATTTAT
CGGCGAGCTGGCCCTATCCGGCAGCCTGCGCCCTATTCCCGGCGCCCTGCCCGCGGCCATGGCCTGTGGCGATTGCGACC
GCACCCTGGTGATTTCCTCCGAGTCCGCCGCCGAGGCGGCACTGATCGGCACGCCCATCAAAGCCGCTTCTTCGCTGCTG
CAGGTGTGCGCACAGCTGCACGGGCGCGAGCCGCTGCCGGATGCCGTAGGTGACGAGACGCAAGAGGAGGCACTGTGCGC
AGATCTGGCGGATGTGCGCGGCCAACTGAAGGCGCGACGCGCACTGGAAGTCGCCGCGGCCGGAAGTCACAACCTGTTGT
TTTACGGTCCGCCGGGTACAGGAAAAACCATGTTGGCGAGTCGCCTTCCGGGTATCCTGCCGCCACTTACCGAGCGCGAG
CTGATTGAGGTGGCCGCACTCTATTCCAGCGCCGGGCTCGCGCGCATTCGCCAGCGGCCATTTCGCGCACCGCACCACTC
GGCCTCTCCCACAGCACTGGTCGGCGGCGGCAGCGACCCGCGCCCCGGAGAAATCAGCCTCGCCCACCGCGGCGTGCTGT
TTCTCGACGAGATGCCAGAGTTCCCCCGCTCCGCGCTGGAGATCCTGCGCGAACCGCTGGAGAACGGCGAAGTGCGGATT
TCCCGCGCCCGCGCTCAGGTCACCTTTCCCGCGGATTTCCAGCTGGTGGCGGCGATGAACCCGTGCCCCTGTGGCTATCT
CGGCGAAACCCGCTGCCGCTGCACCCCGGACCAGATACACCGCTACCGCAACAAACTCTCCGGCCCATTGCTGGATCGCA
TCGATATGCAGGTGGAAGTGGCCAGCATGAGCGCCGCGCAACTGCAGGAGTCCCCGCCCGGGGAAAAGTCCGCGACCGTG
CGCGAGCGGGTGCGCACCGCGCGGGAAATCCAGTTGCAGCGGCAGGGGAAAATAAACGGAGAACTGAAAGGCCGCGAGCT
GGATGAACATTGCTCTCTGGGCAAAACGGAAAGTGCATTGCTGCGCGCATCGGTGGAGAAACTCGGCCTGTCGGCACGCA
GTTACCACCGGGTACTGAAAGTGGCGCGCACGCTCGCCGATTTGTGCGGACAGGAAAATATCGGTACATCACAGATTGCC
GAAGCGCTGGCGTACCGCAATCTCGACCGCAAACCGATAGCAACCGTTTAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-138)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(394-486)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(188-386)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6G8DFL5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

53.785

100

0.544
  comM Vibrio cholerae strain A1552

54.326

100

0.544
  comM Vibrio campbellii strain DS40M4

54.125

100

0.542
  comM Glaesserella parasuis strain SC1401

51.697

100

0.522
  comM Legionella pneumophila str. Paris

49.9

100

0.504
  comM Legionella pneumophila strain ERS1305867

49.9

100

0.504
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.04

100

0.458

Multiple sequence alignment