Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   GO485_RS19975 Genome accession   NZ_CP046904
Coordinates   4658881..4660392 (-) Length   503 a.a.
NCBI ID   WP_145872491.1    Uniprot ID   A0A562Q2V4
Organism   Pseudoduganella flava strain DSM 26639     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4653881..4665392
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GO485_RS19965 (GO485_19920) - 4657901..4658251 (-) 351 WP_145872489.1 DUF1840 domain-containing protein -
  GO485_RS19970 (GO485_19925) - 4658329..4658841 (-) 513 WP_145872490.1 hypothetical protein -
  GO485_RS19975 (GO485_19930) comM 4658881..4660392 (-) 1512 WP_145872491.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  GO485_RS19980 (GO485_19935) - 4660477..4660731 (-) 255 WP_145872492.1 accessory factor UbiK family protein -
  GO485_RS19985 (GO485_19940) - 4660932..4661690 (+) 759 WP_145872493.1 TorF family putative porin -
  GO485_RS19990 (GO485_19945) - 4661708..4662046 (+) 339 WP_130186246.1 P-II family nitrogen regulator -
  GO485_RS19995 (GO485_19950) - 4662057..4663607 (+) 1551 WP_145872494.1 ammonium transporter -
  GO485_RS20000 (GO485_19955) gshA 4663759..4665057 (+) 1299 WP_145872495.1 glutamate--cysteine ligase -

Sequence

Protein


Download         Length: 503 a.a.        Molecular weight: 54327.34 Da        Isoelectric Point: 8.7463

>NTDB_id=409257 GO485_RS19975 WP_145872491.1 4658881..4660392(-) (comM) [Pseudoduganella flava strain DSM 26639]
MSLAVLKSRALCGIEAPEVGVEVHLANGLPAFHIVGLAETEVKEARERVRAAIINAGFDMPAHRITVSLAPADLPKESGR
FDLPIALGILAASGQIPAPALKRYEFAGELSLTGELRPIRGALAMTFAMQRCHNPRSFVLPRANADEAALVNGAAIYPAG
TLLEVCNHFRAADETARLSRHSPALLAAPDNLPDFAEVKGQQSAKRALEIAAAGSHSILLIGPPGAGKTMLATRFPGLLP
PMTDEEALEAAAVQSLTGTFSAANWKRRPFRSPHHTSSGVALVGGGSVPRPGEISLAHCGVLFLDELPEFDRRVLEVLRE
PLESGRVTISRAARQAEFPARFQLVAAMNPCPCGYLGQPAGQCRCTPDTVLRYQGRISGPLYDRIDMQIEVGPVPTDTLL
ADEHAEPSSAVAARVQAAHQRQLERQHKSNRLLSAREVDRHCKPDRAGQGALQNAMLQFHWSARAYHRVLRVARTIADLR
GSPAIKERDVLEAVQYRRALRQP

Nucleotide


Download         Length: 1512 bp        

>NTDB_id=409257 GO485_RS19975 WP_145872491.1 4658881..4660392(-) (comM) [Pseudoduganella flava strain DSM 26639]
ATGAGTCTGGCCGTGCTGAAAAGCCGCGCACTGTGCGGTATCGAAGCGCCTGAAGTGGGCGTCGAAGTACATCTCGCCAA
CGGCTTGCCGGCGTTTCACATCGTTGGGCTGGCCGAAACGGAAGTCAAGGAAGCGCGCGAGCGCGTGCGCGCCGCGATCA
TCAATGCCGGGTTCGACATGCCGGCGCACCGCATCACCGTCAGCCTTGCCCCTGCCGACCTGCCGAAGGAATCCGGGCGG
TTCGACCTGCCGATCGCACTCGGCATCCTGGCCGCCTCCGGCCAGATTCCCGCTCCCGCACTGAAACGCTATGAATTTGC
CGGCGAATTGTCGCTGACGGGCGAGCTGCGCCCGATCCGTGGCGCGCTCGCGATGACGTTCGCCATGCAGCGCTGTCACA
ATCCACGCTCGTTTGTGCTGCCGCGCGCGAACGCTGACGAAGCGGCGCTCGTCAATGGCGCAGCGATCTACCCGGCCGGC
ACGCTGCTGGAGGTGTGCAACCACTTTCGCGCAGCGGACGAAACCGCGCGGCTGTCCCGTCACAGTCCTGCCCTGCTCGC
CGCGCCAGACAATCTGCCGGATTTCGCGGAAGTAAAGGGGCAGCAGAGTGCAAAGCGGGCGCTTGAAATCGCGGCGGCCG
GATCACACAGCATCCTGCTCATCGGCCCACCCGGCGCAGGCAAGACGATGCTTGCCACCCGTTTCCCAGGATTGCTGCCG
CCGATGACGGATGAAGAGGCGCTGGAGGCGGCCGCCGTCCAATCGTTGACGGGAACGTTCTCGGCCGCGAACTGGAAGCG
GCGTCCGTTCCGCTCGCCGCACCATACATCGTCCGGCGTCGCGCTGGTCGGCGGCGGCAGCGTGCCTCGCCCCGGGGAGA
TCTCGCTGGCACACTGCGGTGTACTGTTTCTCGACGAACTGCCCGAATTCGACCGCCGCGTCCTGGAAGTGCTGCGCGAA
CCACTGGAATCCGGCCGGGTGACGATTTCGCGCGCCGCCCGCCAGGCGGAATTTCCGGCGCGCTTCCAGCTCGTGGCCGC
GATGAATCCGTGCCCGTGCGGCTACTTGGGCCAGCCGGCCGGCCAGTGCCGCTGCACGCCGGATACGGTGCTGCGCTACC
AGGGGCGCATCTCGGGCCCGTTGTACGACCGGATCGACATGCAGATCGAGGTCGGGCCCGTGCCGACCGACACTTTGCTG
GCGGACGAGCACGCCGAACCATCCAGCGCGGTCGCTGCCCGGGTACAGGCCGCGCACCAGCGGCAGCTGGAACGACAACA
CAAGAGCAACCGTCTTTTGAGCGCACGCGAGGTCGACCGCCACTGCAAACCCGACCGTGCCGGCCAAGGTGCGCTCCAGA
ACGCAATGCTGCAATTCCATTGGTCGGCACGCGCATACCACCGCGTGCTGCGCGTCGCGCGGACCATCGCCGATCTGCGC
GGCTCGCCGGCGATCAAGGAACGCGATGTCCTCGAGGCCGTGCAGTACCGGCGTGCGTTGCGGCAGCCGTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(406-497)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(194-396)

Subunit ChlI of Mg-chelatase (ChlI)

(21-144)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A562Q2V4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

52.827

100

0.539
  comM Vibrio cholerae strain A1552

52.86

100

0.533
  comM Haemophilus influenzae Rd KW20

50.296

100

0.507
  comM Glaesserella parasuis strain SC1401

50.595

100

0.507
  comM Legionella pneumophila str. Paris

49.209

100

0.495
  comM Legionella pneumophila strain ERS1305867

49.209

100

0.495
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.908

99.602

0.457

Multiple sequence alignment