Detailed information NTG0409228

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: GQA94_RS08055
• Genome accession: NZ_CP046902
• Coordinates: 1725046..1725912 (+)
• Length: 288 a.a.
• NCBI ID: WP_158187522.1
• Uniprot ID: A0A6I6LN94
• Organism: Stutzerimonas stutzeri strain PM101005
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1720046..1730912

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GQA94_RS08040 (GQA94_08040)	pilA/pilAI	1721452..1721895 (-)	444	WP_158187519.1	pilin	Machinery gene
GQA94_RS08045 (GQA94_08045)	pilB	1722120..1723823 (+)	1704	WP_158187520.1	type IV-A pilus assembly ATPase PilB	Machinery gene
GQA94_RS08050 (GQA94_08050)	pilC	1723825..1725042 (+)	1218	WP_158187521.1	type II secretion system F family protein	Machinery gene
GQA94_RS08055 (GQA94_08055)	pilD	1725046..1725912 (+)	867	WP_158187522.1	A24 family peptidase	Machinery gene
GQA94_RS08060 (GQA94_08060)	coaE	1726356..1726964 (+)	609	WP_158187523.1	dephospho-CoA kinase	-
GQA94_RS08065 (GQA94_08065)	yacG	1726961..1727158 (+)	198	WP_102836851.1	DNA gyrase inhibitor YacG	-
GQA94_RS08070 (GQA94_08070)	-	1727208..1727903 (-)	696	WP_158187524.1	energy-coupling factor ABC transporter permease	-
GQA94_RS08075 (GQA94_08075)	-	1728019..1729056 (-)	1038	WP_158187525.1	NADP(H)-dependent aldo-keto reductase	-
GQA94_RS08080 (GQA94_08080)	rplM	1729450..1729878 (+)	429	WP_019342644.1	50S ribosomal protein L13	-
GQA94_RS08085 (GQA94_08085)	rpsI	1729893..1730285 (+)	393	WP_158187526.1	30S ribosomal protein S9	-

Sequence

Protein

• Length: 288 a.a.
• Molecular weight: 31840.72 Da
• Isoelectric Point: 6.8183

>NTDB_id=409228 GQA94_RS08055 WP_158187522.1 1725046..1725912(+) (pilD) [Stutzerimonas stutzeri strain PM101005]
MDVAIFLASNTLAFVFCALVLGLLVGSFLNVVIHRLPLMMQRDWRAQAREFLDLPGEPSATFNLVLPHSHCPHCDHEIRP
WENIPLVSWLALRGRCSSCRAPISRRYPLVELLCGLLSAYVAWHFGFSWEAGAMLLLTWGLLAMSMIDVDHQLLPDSIVL
PLLWLGLIANQSGLFASLPDALWGAIAGYLSLWSVYWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQVLPLTILLSSVVGA
VLGTIMLRMQKADTGTAIPFGPYLAIAGWIALLWGDQITSSYLQFARL

Nucleotide

• Length: 867 bp

>NTDB_id=409228 GQA94_RS08055 WP_158187522.1 1725046..1725912(+) (pilD) [Stutzerimonas stutzeri strain PM101005]
ATGGACGTGGCAATTTTTCTGGCCAGCAACACGCTGGCCTTTGTTTTTTGCGCGCTCGTGCTGGGCTTGTTGGTCGGCAG
TTTTCTCAATGTCGTGATCCATCGCCTGCCGCTCATGATGCAGCGGGATTGGCGCGCTCAGGCGCGTGAGTTTCTCGACT
TGCCGGGCGAGCCGTCCGCGACGTTCAATCTGGTTTTGCCTCATTCCCATTGCCCGCATTGCGATCACGAAATTCGCCCA
TGGGAAAACATTCCGCTGGTGAGTTGGCTCGCGTTGCGGGGGCGGTGTTCGTCCTGTCGTGCGCCGATCAGTCGACGCTA
TCCTTTGGTGGAGCTGCTCTGCGGGCTATTGTCCGCTTACGTCGCCTGGCACTTCGGCTTTTCCTGGGAGGCGGGTGCGA
TGTTACTGCTGACCTGGGGGTTGCTGGCGATGAGCATGATCGATGTCGATCACCAGCTCTTGCCTGATTCCATCGTGCTG
CCGTTGCTATGGCTGGGGCTGATCGCCAATCAGTCCGGGCTGTTCGCTTCGTTGCCAGACGCGCTCTGGGGGGCGATTGC
CGGGTATCTCAGCCTGTGGTCGGTGTACTGGTTGTTCAAGCTGGTGACCGGCAAGGAGGGCATGGGCTACGGGGACTTCA
AGTTGCTGGCCATGCTGGGAGCCTGGGGTGGCTGGCAGGTTCTGCCGTTGACCATTCTGCTGTCGTCCGTGGTGGGCGCG
GTGCTGGGTACGATCATGCTGCGTATGCAGAAGGCCGATACCGGCACGGCGATTCCCTTCGGCCCCTATCTCGCGATTGC
CGGCTGGATCGCGTTGCTATGGGGCGACCAGATCACCTCGAGCTATCTGCAGTTCGCCAGGCTCTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (136-243)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-125)

3D structure

• AlphaFold DB: A0A6I6LN94

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	58.242	94.792	0.552
pilD	Vibrio campbellii strain DS40M4	55.678	94.792	0.528
pilD	Acinetobacter nosocomialis M2	49.123	98.958	0.486
pilD	Neisseria gonorrhoeae MS11	52.852	91.319	0.483
pilD	Acinetobacter baumannii D1279779	48.772	98.958	0.483