Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   GQA94_RS05645 Genome accession   NZ_CP046902
Coordinates   1215278..1216777 (-) Length   499 a.a.
NCBI ID   WP_158187158.1    Uniprot ID   A0A6I6LMK5
Organism   Stutzerimonas stutzeri strain PM101005     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1210278..1221777
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GQA94_RS05635 (GQA94_05635) - 1211436..1213079 (+) 1644 WP_158187156.1 bifunctional diguanylate cyclase/phosphodiesterase -
  GQA94_RS05640 (GQA94_05640) betT 1213110..1215083 (-) 1974 WP_158187157.1 choline BCCT transporter BetT -
  GQA94_RS05645 (GQA94_05645) comM 1215278..1216777 (-) 1500 WP_158187158.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  GQA94_RS05650 (GQA94_05650) - 1216810..1217073 (-) 264 WP_158187159.1 accessory factor UbiK family protein -
  GQA94_RS05655 (GQA94_05655) glnK 1217466..1217804 (+) 339 WP_003096476.1 P-II family nitrogen regulator -
  GQA94_RS05660 (GQA94_05660) - 1217966..1219282 (+) 1317 WP_158187160.1 ammonium transporter -
  GQA94_RS05665 (GQA94_05665) - 1219364..1220617 (+) 1254 WP_158187161.1 ammonium transporter -
  GQA94_RS05670 (GQA94_05670) - 1220714..1221139 (+) 426 WP_158187162.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  GQA94_RS05675 (GQA94_05675) sutA 1221214..1221546 (+) 333 WP_158187163.1 transcriptional regulator SutA -

Sequence

Protein


Download         Length: 499 a.a.        Molecular weight: 53112.04 Da        Isoelectric Point: 7.8736

>NTDB_id=409217 GQA94_RS05645 WP_158187158.1 1215278..1216777(-) (comM) [Stutzerimonas stutzeri strain PM101005]
MSLAIVHSRAQVGVEAPTVTVEAHLANGLPSLALVGLPETAVKESKDRVRSAILTCDFDFPARRITLNLAPADLPKDGGR
FDLAIALGILAASGQIPADRLDTLECLGELALSGALRSVQGVLPAALAARQAGRALLVPRANAEEASLASGLVVYAADHL
LEVAAHFNGVVPIAPFQPQGLLRQLLPYPDLADVQGQAAAKRGLLIAAAGAHNLLFSGPPGTGKTLLASRLPGLLPPLDE
HEALEVAAIHSVASQSPLEHWPQRPFRQPHHSASGPALVGGGSRPRPGEITLAHQGVLFLDELPEFDRKVLEVLREPLES
GCIVIARARDKVRFPARFQLVAAMNPCPCGYLGDPSGRCRCSPDQIQRYRGKLSGPLLDRIDLHLTVAREATALNAPPTT
GENSAAMARQVAEARSIQLARQGCANAFLDLSGLRSHCQLQPEDQQWLERACERLGLSLRAAHRILKVARTLADLQQAQS
IHRAHLAEALQYRPGSSTP

Nucleotide


Download         Length: 1500 bp        

>NTDB_id=409217 GQA94_RS05645 WP_158187158.1 1215278..1216777(-) (comM) [Stutzerimonas stutzeri strain PM101005]
ATGTCCCTTGCGATAGTGCACAGCCGCGCCCAGGTAGGCGTCGAGGCACCCACCGTCACGGTCGAAGCCCACCTGGCCAA
CGGGTTGCCTTCCCTGGCGCTGGTCGGATTGCCGGAAACGGCAGTCAAGGAGAGCAAGGATCGCGTGCGCAGTGCGATCC
TGACCTGCGACTTCGATTTTCCCGCGCGGCGCATCACCCTGAATCTTGCCCCGGCCGATTTGCCTAAGGACGGCGGCCGC
TTCGATCTGGCCATCGCCCTGGGTATCCTCGCGGCGAGCGGCCAGATTCCGGCGGACCGCCTCGACACGCTCGAGTGTCT
GGGCGAGCTGGCGCTATCCGGCGCGTTACGGTCGGTGCAAGGCGTTCTGCCCGCGGCGTTGGCGGCGCGTCAGGCCGGCC
GAGCTCTGCTGGTTCCGCGAGCCAACGCCGAGGAAGCCAGCCTGGCCTCTGGCCTTGTGGTCTACGCAGCCGACCATCTG
CTGGAGGTCGCGGCGCACTTCAATGGCGTCGTGCCTATTGCACCCTTTCAGCCTCAGGGCCTGCTGCGCCAGTTGTTGCC
CTACCCCGATCTGGCCGATGTCCAGGGCCAGGCGGCCGCCAAGCGCGGCCTGCTGATCGCTGCCGCGGGCGCGCACAACC
TGCTGTTTTCGGGGCCTCCCGGGACCGGCAAGACGTTGCTGGCCAGCCGCCTGCCCGGCCTGCTGCCTCCGCTGGACGAG
CACGAAGCACTGGAAGTCGCGGCCATTCACTCGGTTGCCAGCCAGTCGCCACTGGAGCATTGGCCGCAACGACCGTTTCG
CCAGCCCCATCACAGTGCATCGGGACCGGCACTGGTTGGCGGCGGCAGCCGTCCCAGGCCCGGCGAGATCACGCTGGCCC
ATCAGGGCGTGCTGTTTCTCGACGAGTTGCCCGAGTTCGATCGCAAGGTTCTGGAAGTGCTGCGCGAACCCCTGGAGTCG
GGCTGCATCGTGATCGCCCGGGCGCGAGACAAGGTGCGCTTCCCGGCGCGTTTCCAGCTCGTCGCGGCAATGAACCCGTG
CCCCTGCGGCTATCTTGGCGACCCCAGCGGGCGCTGTCGCTGTTCGCCTGACCAGATTCAGCGCTACCGCGGCAAGCTGT
CCGGACCGCTGCTTGACCGGATTGACCTGCACCTGACGGTCGCCCGCGAGGCCACAGCGCTGAACGCACCCCCGACGACT
GGCGAAAACAGCGCCGCGATGGCCAGGCAAGTGGCCGAGGCGCGGAGCATCCAGCTGGCACGTCAAGGTTGCGCCAACGC
CTTCCTGGACCTCTCGGGACTGCGCAGCCATTGCCAACTGCAGCCCGAAGACCAGCAGTGGCTCGAGCGCGCTTGCGAGC
GGCTGGGCCTGTCCCTGCGCGCCGCACATCGCATTCTGAAGGTGGCGCGCACACTGGCGGACCTGCAACAGGCGCAATCG
ATCCATCGCGCTCACCTGGCAGAGGCGCTGCAGTACCGCCCAGGCAGCTCGACGCCCTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6I6LMK5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

57.374

99.198

0.569
  comM Vibrio cholerae strain A1552

57.172

99.198

0.567
  comM Haemophilus influenzae Rd KW20

55.489

100

0.557
  comM Glaesserella parasuis strain SC1401

55.311

100

0.553
  comM Legionella pneumophila str. Paris

50.598

100

0.509
  comM Legionella pneumophila strain ERS1305867

50.598

100

0.509
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.527

100

0.459

Multiple sequence alignment