Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   METME_RS01385 Genome accession   NC_015572
Coordinates   312963..314471 (-) Length   502 a.a.
NCBI ID   WP_013817009.1    Uniprot ID   F9ZZS7
Organism   Methylomonas methanica MC09     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 307963..319471
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  METME_RS01365 (Metme_0283) - 308840..309412 (+) 573 WP_013817005.1 PilN domain-containing protein -
  METME_RS01370 (Metme_0284) - 309409..310041 (+) 633 WP_013817006.1 type 4a pilus biogenesis protein PilO -
  METME_RS01375 (Metme_0285) - 310038..310595 (+) 558 WP_041363693.1 pilus assembly protein PilP -
  METME_RS01380 (Metme_0286) pilQ 310609..312873 (+) 2265 WP_013817008.1 type IV pilus secretin family protein -
  METME_RS01385 (Metme_0287) comM 312963..314471 (-) 1509 WP_013817009.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  METME_RS01390 (Metme_0288) - 314479..314730 (-) 252 WP_013817010.1 accessory factor UbiK family protein -
  METME_RS01395 (Metme_0289) - 314736..315320 (-) 585 WP_041364891.1 MarR family winged helix-turn-helix transcriptional regulator -
  METME_RS01400 (Metme_0290) - 315438..316343 (+) 906 WP_013817012.1 MoxR family ATPase -
  METME_RS01405 (Metme_0291) - 316463..317302 (+) 840 WP_238527301.1 DUF58 domain-containing protein -
  METME_RS01410 (Metme_0292) - 317393..319366 (+) 1974 WP_013817014.1 DUF3488 and transglutaminase-like domain-containing protein -

Sequence

Protein


Download         Length: 502 a.a.        Molecular weight: 54340.31 Da        Isoelectric Point: 8.1481

>NTDB_id=40916 METME_RS01385 WP_013817009.1 312963..314471(-) (comM) [Methylomonas methanica MC09]
MSLAVVFSRGRSGIDAPLVTVEVHVSNGLPALNIVGLPETAVKESKDRVRGAILNSRFEFPFQRITINLAPADLPKEGGR
FDLAIALGILAASGQIPKDNLAQYECVGELSLGGELRPIAGALPVAIHARNANRQLILPVGCASEAGLINDAQLLPAHHL
LEVCAHLTGQKPIPTAKPVIAKSESLFDIDFADVHGQFHVKRAFEIAAAGSHNILLLGPPGTGKSMLAARLPTILPELSE
EQAQETAAIASISDQGLDVSRWRKPPFRAPHHTASAAALVGGGSNPKPGEISLSHNGALFLDELPEFDRKVLEVLREPLE
TGHITISRANRQADFPARFQLIAAMNPCPCGYLGDASGRCHCSSEQVARYRARVSGPLLDRIDMHLEVPRVALDVLRRGA
KEGEESSRTIRSRVIAARQIAYQRQGKTNSELNAKEVKLYCELTEAGHRLLEQALEKFGLSHRAYHRILKLARSIADLAG
SETMEISHLSEAISYRKLDRSR

Nucleotide


Download         Length: 1509 bp        

>NTDB_id=40916 METME_RS01385 WP_013817009.1 312963..314471(-) (comM) [Methylomonas methanica MC09]
ATGTCGCTGGCTGTGGTTTTTAGCCGGGGACGTTCCGGCATCGATGCTCCGCTGGTGACGGTTGAAGTTCACGTTAGTAA
CGGCTTGCCGGCGCTTAATATCGTCGGCCTGCCCGAAACTGCCGTCAAGGAAAGCAAGGATCGGGTACGCGGAGCGATTC
TCAATTCCCGGTTCGAGTTCCCATTTCAGCGCATTACCATCAATCTCGCTCCCGCCGATTTACCTAAGGAAGGCGGGCGC
TTTGATCTTGCAATAGCCCTGGGCATTTTGGCCGCCTCCGGGCAAATACCCAAAGATAATCTGGCTCAATACGAATGCGT
CGGCGAACTTTCCCTAGGAGGTGAGTTGCGGCCCATTGCCGGTGCGTTACCGGTAGCCATACACGCTCGCAACGCCAATA
GGCAACTGATCCTGCCAGTTGGCTGCGCCAGCGAAGCGGGCTTGATTAATGACGCACAGCTCTTGCCCGCTCATCATTTG
CTGGAGGTTTGCGCACATTTGACTGGCCAAAAGCCAATTCCCACGGCAAAGCCGGTTATCGCAAAATCGGAATCGTTATT
CGATATCGATTTTGCCGACGTACACGGCCAATTTCACGTCAAACGGGCCTTTGAAATCGCTGCCGCCGGATCCCACAATA
TACTGCTCCTTGGGCCACCGGGCACTGGAAAATCCATGTTGGCGGCCCGCCTGCCTACGATATTGCCGGAACTTAGCGAA
GAACAAGCCCAAGAAACTGCGGCTATCGCCTCCATCAGCGACCAGGGACTTGATGTTAGCCGATGGCGAAAACCGCCTTT
TCGCGCGCCTCACCACACGGCGTCGGCTGCAGCATTGGTCGGCGGAGGCAGCAACCCGAAACCGGGTGAAATATCCTTAT
CGCACAATGGTGCTTTGTTTTTAGATGAGCTACCTGAGTTCGACCGTAAAGTTTTAGAGGTGTTGCGGGAACCTTTGGAA
ACGGGGCATATCACTATCTCCCGCGCCAACCGGCAAGCCGACTTTCCTGCCCGCTTCCAACTGATTGCCGCCATGAACCC
TTGCCCGTGCGGTTATCTCGGAGACGCGTCCGGCCGCTGTCATTGTAGCTCTGAACAAGTGGCCCGCTATCGCGCCCGGG
TTTCCGGGCCGCTGCTAGATCGAATCGACATGCATTTGGAAGTACCGCGCGTGGCTTTGGATGTTTTGAGAAGAGGCGCC
AAGGAAGGCGAAGAAAGTAGTCGAACGATACGCTCCCGTGTAATAGCGGCCAGACAAATAGCCTATCAGCGCCAAGGCAA
AACCAATTCCGAACTGAACGCCAAGGAAGTCAAACTATATTGCGAACTGACTGAAGCAGGGCATAGGCTGCTGGAACAAG
CCCTGGAAAAATTTGGCCTGTCCCATCGCGCCTATCATCGAATCTTGAAACTGGCTCGGAGCATTGCCGATCTGGCAGGC
TCCGAAACCATGGAAATCAGCCATTTAAGCGAAGCGATAAGTTATCGAAAACTCGATCGAAGTCGCTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-139)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-392)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(404-496)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB F9ZZS7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

54.2

99.602

0.54
  comM Vibrio campbellii strain DS40M4

54

99.602

0.538
  comM Glaesserella parasuis strain SC1401

53.082

100

0.532
  comM Haemophilus influenzae Rd KW20

51.984

100

0.522
  comM Legionella pneumophila str. Paris

51.509

99.004

0.51
  comM Legionella pneumophila strain ERS1305867

51.509

99.004

0.51
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

47.441

100

0.48

Multiple sequence alignment