Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   E3Z27_RS27355 Genome accession   NZ_CP046874
Coordinates   6236657..6238150 (+) Length   497 a.a.
NCBI ID   WP_047702565.1    Uniprot ID   -
Organism   Pseudomonas mediterranea strain S58     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6231657..6243150
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E3Z27_RS27330 (E3Z27_27335) - 6231733..6233067 (-) 1335 WP_047702562.1 ammonium transporter -
  E3Z27_RS27335 (E3Z27_27340) glnK 6233101..6233439 (-) 339 WP_002555808.1 P-II family nitrogen regulator -
  E3Z27_RS27340 (E3Z27_27345) - 6233854..6234114 (+) 261 WP_159286101.1 accessory factor UbiK family protein -
  E3Z27_RS27345 (E3Z27_27350) - 6234325..6234861 (+) 537 WP_159286102.1 N-acetyltransferase -
  E3Z27_RS28560 - 6234894..6235064 (+) 171 WP_174245323.1 hypothetical protein -
  E3Z27_RS27350 (E3Z27_27355) - 6235179..6236456 (-) 1278 WP_159286103.1 sensor histidine kinase -
  E3Z27_RS27355 (E3Z27_27360) comM 6236657..6238150 (+) 1494 WP_047702565.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  E3Z27_RS27360 (E3Z27_27365) - 6238157..6239371 (-) 1215 WP_047702566.1 aldose 1-epimerase family protein -
  E3Z27_RS29500 - 6239810..6240670 (-) 861 WP_406822794.1 methyl-accepting chemotaxis protein -
  E3Z27_RS29505 - 6240713..6241840 (-) 1128 Protein_5464 Cache 3/Cache 2 fusion domain-containing protein -
  E3Z27_RS27370 (E3Z27_27375) - 6241975..6242895 (-) 921 WP_047702568.1 LysR substrate-binding domain-containing protein -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 52937.06 Da        Isoelectric Point: 7.6675

>NTDB_id=409086 E3Z27_RS27355 WP_047702565.1 6236657..6238150(+) (comM) [Pseudomonas mediterranea strain S58]
MSLAIVHSRAQVGVEAPAVTVEVHLANGLPSLTMVGLPEAAVKESKDRVRSAIINSGLNFPARRITLNLAPADLPKDGGR
FDLAIALGILAASVQVPTLTLDDVECLGELALSGAVRPVRGVLPAALAARKAGRILVVPRANAEEACLASGLKVIAVDHL
LEVVAHFNGHAPVEPFVSNGLLSASKPYPDLNEVQGQLGAKRALLIAAAGAHNLLFSGPPGTGKTLLASRLPGLLPPLAE
SEALEVAAIQSVASCVPLSHWPQRPFRQPHHSASGPALVGGGSKPQPGEITLAHHGVLFLDELPEFDRKVLEVLREPLES
GHIVVSRARDRVRFPARFQLVAAMNPCPCGYLGEPSGRCSCTPDMVQRYRNKLSGPLLDRIDLHLTVAREATALNPKCEP
GEDTATVAEQVAEARERQQTRQGCANAFLDLPGLRRHCTLSTADETWLEMACERLTLSLRAAHRLLKVARTLADLEQAGR
ISREHLAEALQYRPATA

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=409086 E3Z27_RS27355 WP_047702565.1 6236657..6238150(+) (comM) [Pseudomonas mediterranea strain S58]
ATGTCGCTCGCCATTGTCCATAGCCGCGCCCAAGTAGGGGTGGAGGCTCCCGCCGTTACCGTTGAGGTCCATCTTGCCAA
TGGCCTGCCGTCACTGACGATGGTCGGTCTGCCGGAAGCGGCGGTAAAGGAAAGCAAGGACCGGGTGCGCAGCGCGATCA
TCAATTCGGGGCTGAACTTCCCGGCGCGGCGCATTACCTTGAACCTGGCACCGGCGGACCTGCCGAAGGACGGCGGGCGG
TTCGACCTGGCCATTGCCCTGGGGATCCTGGCGGCCAGCGTGCAGGTGCCGACCCTGACGCTGGACGATGTGGAATGCCT
CGGTGAGCTGGCATTATCCGGCGCCGTGCGACCGGTGCGCGGGGTATTGCCCGCAGCGCTGGCGGCGCGCAAGGCCGGAC
GCATTCTGGTGGTGCCGCGGGCGAATGCCGAGGAAGCGTGCCTTGCCTCGGGCCTGAAAGTGATCGCCGTGGATCATCTG
CTTGAAGTGGTGGCGCACTTCAACGGTCACGCTCCGGTCGAGCCTTTCGTTTCGAACGGCCTGCTCTCGGCCAGCAAGCC
CTACCCTGACCTGAATGAAGTGCAAGGCCAGCTCGGGGCCAAGCGGGCCTTGCTGATCGCTGCCGCCGGCGCGCACAACC
TGCTGTTCAGCGGGCCACCCGGTACCGGCAAGACATTGCTCGCCAGTCGTCTGCCGGGACTGCTGCCGCCACTGGCCGAG
AGCGAAGCCCTGGAGGTCGCGGCGATCCAGTCGGTCGCCAGTTGCGTACCCTTGAGCCATTGGCCGCAACGCCCTTTTCG
CCAGCCCCATCATTCGGCATCCGGTCCGGCGCTGGTGGGTGGAGGTTCCAAACCCCAGCCGGGCGAGATCACCCTGGCCC
ACCATGGCGTGTTATTCCTGGATGAATTGCCGGAGTTCGACCGCAAGGTCCTGGAAGTCCTGCGGGAGCCACTCGAATCG
GGCCACATCGTCGTGTCTCGTGCCCGCGACCGCGTACGCTTTCCGGCGCGCTTCCAACTGGTGGCTGCGATGAATCCTTG
TCCTTGTGGATATCTTGGCGAGCCCAGTGGCCGTTGCTCCTGCACACCCGACATGGTGCAGCGCTATCGCAACAAGCTCT
CAGGCCCGTTGCTGGATCGCATCGACCTGCACCTGACGGTCGCACGGGAGGCCACGGCGTTGAATCCCAAATGCGAACCG
GGTGAGGACACGGCTACCGTGGCCGAACAGGTGGCCGAAGCCCGAGAACGCCAGCAGACGCGCCAGGGCTGTGCCAACGC
GTTTCTGGACCTGCCGGGTTTGCGTCGGCATTGCACGTTATCCACAGCCGATGAAACCTGGCTGGAAATGGCCTGCGAGC
GACTGACTCTGTCGCTGCGGGCCGCCCATCGCCTGCTCAAGGTCGCGCGGACACTGGCGGACCTTGAGCAAGCGGGCCGT
ATCAGCCGGGAGCACCTGGCCGAAGCCTTGCAATACCGACCTGCTACGGCCTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

55.96

99.598

0.557
  comM Vibrio cholerae strain A1552

55.96

99.598

0.557
  comM Haemophilus influenzae Rd KW20

54.309

100

0.545
  comM Glaesserella parasuis strain SC1401

53.4

100

0.537
  comM Legionella pneumophila str. Paris

50.202

99.799

0.501
  comM Legionella pneumophila strain ERS1305867

50.202

99.799

0.501
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.627

100

0.473

Multiple sequence alignment