Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   E3Z27_RS24115 Genome accession   NZ_CP046874
Coordinates   5542278..5543621 (+) Length   447 a.a.
NCBI ID   WP_055127682.1    Uniprot ID   -
Organism   Pseudomonas mediterranea strain S58     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5537278..5548621
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E3Z27_RS24095 (E3Z27_24105) pgeF 5537492..5538217 (-) 726 WP_047698319.1 peptidoglycan editing factor PgeF -
  E3Z27_RS24100 (E3Z27_24110) rluD 5538214..5539176 (-) 963 WP_047698321.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  E3Z27_RS24105 (E3Z27_24115) - 5539327..5540343 (+) 1017 WP_047698322.1 outer membrane protein assembly factor BamD -
  E3Z27_RS28890 - 5540469..5540702 (+) 234 WP_081993193.1 PP0621 family protein -
  E3Z27_RS24110 (E3Z27_24120) pilS 5540692..5542281 (+) 1590 WP_047698324.1 two-component system sensor histidine kinase NtrB Regulator
  E3Z27_RS24115 (E3Z27_24125) pilR 5542278..5543621 (+) 1344 WP_055127682.1 sigma-54-dependent transcriptional regulator Regulator
  E3Z27_RS28610 (E3Z27_24130) - 5543956..5544213 (-) 258 WP_159285997.1 hypothetical protein -
  E3Z27_RS24125 (E3Z27_24135) thiO 5544457..5545563 (-) 1107 WP_159285998.1 glycine oxidase ThiO -
  E3Z27_RS24130 (E3Z27_24140) - 5545620..5546022 (-) 403 Protein_4820 type IV pilin protein -

Sequence

Protein


Download         Length: 447 a.a.        Molecular weight: 50181.50 Da        Isoelectric Point: 5.9903

>NTDB_id=409079 E3Z27_RS24115 WP_055127682.1 5542278..5543621(+) (pilR) [Pseudomonas mediterranea strain S58]
MNTRSRQRILIVDDEPDIRELLDITLGRMKLDTRSARNLAEAQSLLADEAFDLCLTDMRLPDGTGLELVQHIQQRFPQLP
VAMITAYGSLETAIDALKAGAFDFLTKPVDLGRLRELVTSALRLPTATAPTTIDRCLLGDSPPMRNVRKQIEKLARSQAP
VYISGESGCGKELVARLIHEQGPRSNRSFVPVNCGAIPTELMESEFFGHRKGSFSGAIEDKPGLFQAANGGTLFLDEVAD
LPLAMQVKLLRAIQEKAVRAVGGQQEEVVDVRILCATHKDLDAEVAAGRFRQDLYYRLNVIELRVPPLRERREDIEPLAN
HMLQRLAATTGNPAARLHPQALEALRNYRFPGNVRELENMLERAYTLCEHQQIEADDLRLAEGNGITDATSPDLMRVDNL
EDYLEDVERKVILQALEETRWNRTAAAQRLKLSFRSMRYRLKKLGLD

Nucleotide


Download         Length: 1344 bp        

>NTDB_id=409079 E3Z27_RS24115 WP_055127682.1 5542278..5543621(+) (pilR) [Pseudomonas mediterranea strain S58]
TTGAATACACGCTCACGGCAACGGATCCTGATCGTCGATGACGAACCGGACATCCGCGAACTCCTGGACATCACCCTGGG
CCGGATGAAACTCGACACCCGCAGCGCCAGGAATCTTGCCGAGGCCCAATCCCTGCTGGCGGACGAAGCCTTCGACCTGT
GCCTGACCGACATGCGCCTGCCCGACGGCACCGGCCTGGAACTGGTGCAGCACATCCAACAACGCTTCCCGCAATTGCCC
GTGGCAATGATCACTGCCTACGGCAGTCTGGAAACCGCCATCGACGCCCTCAAGGCCGGGGCTTTTGACTTCCTGACCAA
ACCGGTCGACCTGGGTCGGCTGCGGGAACTGGTGACCAGCGCCCTGCGCTTGCCGACTGCCACCGCCCCGACCACCATCG
ACCGATGCCTGCTGGGCGACTCCCCGCCGATGCGCAACGTGCGCAAACAGATCGAAAAACTCGCCCGCAGCCAGGCACCG
GTGTACATCAGCGGGGAATCCGGCTGTGGCAAGGAGCTGGTGGCACGGCTGATCCACGAACAAGGGCCCCGCTCCAACCG
GAGTTTTGTGCCGGTCAACTGTGGGGCCATTCCGACAGAACTGATGGAAAGCGAGTTTTTCGGCCATCGCAAAGGCAGCT
TCAGCGGGGCCATCGAGGACAAGCCCGGTCTGTTCCAGGCCGCCAATGGTGGCACCCTGTTCCTCGATGAAGTGGCTGAC
CTGCCCTTGGCAATGCAGGTCAAACTGCTGCGGGCGATCCAGGAAAAAGCCGTGCGCGCCGTTGGCGGCCAGCAGGAGGA
AGTGGTGGATGTCCGTATCCTCTGCGCCACCCATAAGGACCTGGACGCCGAAGTCGCCGCCGGGCGCTTTCGCCAGGACC
TGTACTACCGCCTGAACGTCATCGAATTGCGCGTCCCGCCCCTGCGTGAACGCCGCGAAGACATCGAACCGCTGGCCAAC
CACATGCTCCAGCGTCTGGCAGCCACCACCGGCAACCCCGCCGCCAGGCTCCATCCCCAGGCCCTTGAGGCTCTTCGAAA
CTACCGCTTCCCCGGCAACGTGCGCGAGCTGGAAAACATGCTCGAACGGGCCTACACCCTCTGCGAACACCAACAGATCG
AAGCCGACGACCTGCGCCTGGCCGAAGGCAATGGCATCACCGACGCCACCAGCCCCGATCTGATGCGGGTCGACAACCTG
GAAGACTATCTGGAAGACGTCGAACGCAAAGTCATCCTCCAGGCCCTGGAGGAAACCCGCTGGAACCGCACCGCCGCAGC
CCAGCGATTGAAGCTGTCGTTTCGGTCGATGCGGTATCGGTTGAAGAAATTAGGGTTGGATTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(9-118)

Bacterial regulatory protein, Fis family (HTH_8)

(404-444)

Sigma-54 interaction domain (Sigma54_activat)

(138-303)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

80.18

99.329

0.796
  pilR Acinetobacter baumannii strain A118

49.02

100

0.503

Multiple sequence alignment