Detailed information
Bioinformatically predicted
Overview
| Name | pilD | Type | Machinery gene |
| Locus tag | E3Z27_RS24025 | Genome accession | NZ_CP046874 |
| Coordinates | 5526657..5527526 (+) | Length | 289 a.a. |
| NCBI ID | WP_047698305.1 | Uniprot ID | A0AAX2D8P6 |
| Organism | Pseudomonas mediterranea strain S58 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 5521657..5532526
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| E3Z27_RS24000 (E3Z27_24010) | - | 5521842..5522138 (+) | 297 | WP_047698296.1 | DUF2845 domain-containing protein | - |
| E3Z27_RS24005 (E3Z27_24015) | - | 5522438..5522791 (-) | 354 | WP_047698298.1 | BON domain-containing protein | - |
| E3Z27_RS24010 (E3Z27_24020) | - | 5523089..5523511 (-) | 423 | WP_047698300.1 | pilin | - |
| E3Z27_RS24015 (E3Z27_24025) | pilB | 5523735..5525435 (+) | 1701 | WP_047698302.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| E3Z27_RS24020 (E3Z27_24030) | pilC | 5525438..5526655 (+) | 1218 | WP_047698304.1 | type II secretion system F family protein | Machinery gene |
| E3Z27_RS24025 (E3Z27_24035) | pilD | 5526657..5527526 (+) | 870 | WP_047698305.1 | prepilin peptidase | Machinery gene |
| E3Z27_RS24030 (E3Z27_24040) | coaE | 5527537..5528160 (+) | 624 | WP_047698307.1 | dephospho-CoA kinase | - |
| E3Z27_RS24035 (E3Z27_24045) | yacG | 5528157..5528363 (+) | 207 | WP_047698308.1 | DNA gyrase inhibitor YacG | - |
| E3Z27_RS24040 (E3Z27_24050) | - | 5528360..5528575 (-) | 216 | WP_047698310.1 | hypothetical protein | - |
| E3Z27_RS24045 (E3Z27_24055) | - | 5528639..5529325 (-) | 687 | WP_047698311.1 | energy-coupling factor ABC transporter permease | - |
| E3Z27_RS24050 (E3Z27_24060) | - | 5529545..5530171 (+) | 627 | WP_003185538.1 | DUF1780 domain-containing protein | - |
| E3Z27_RS24055 (E3Z27_24065) | - | 5530273..5530446 (+) | 174 | WP_003185543.1 | DUF3094 domain-containing protein | - |
| E3Z27_RS24060 (E3Z27_24070) | - | 5530528..5531826 (+) | 1299 | WP_047698313.1 | NAD(P)/FAD-dependent oxidoreductase | - |
Sequence
Protein
Download Length: 289 a.a. Molecular weight: 32000.13 Da Isoelectric Point: 8.0659
>NTDB_id=409077 E3Z27_RS24025 WP_047698305.1 5526657..5527526(+) (pilD) [Pseudomonas mediterranea strain S58]
MPLSEFFVLYPMAFVLTALLLGLIVGSFLNVLVWRLPKMLTREWRLQAHDLLGLPAETPGPVYNLMLPHSQCPHCGHRIR
AWENIPLFSYLALHGRCSSCATPIGRRYPLTELACGALSAFVAWHFGFGWQAALVMVLSWGLLGMSLIDAEHQLLPDTLV
LPLLWLGLIVNSFGLFVSLNQAMWGAVAGYLTLWSVFWIFKLITGKEGMGYGDFKLLAMLGAWGGWQILPLTLLLSSLVG
AVVGVVMLRMRNAPASTQIPFGPYLAIAGWIALLWGGQITDFYWHSVGF
MPLSEFFVLYPMAFVLTALLLGLIVGSFLNVLVWRLPKMLTREWRLQAHDLLGLPAETPGPVYNLMLPHSQCPHCGHRIR
AWENIPLFSYLALHGRCSSCATPIGRRYPLTELACGALSAFVAWHFGFGWQAALVMVLSWGLLGMSLIDAEHQLLPDTLV
LPLLWLGLIVNSFGLFVSLNQAMWGAVAGYLTLWSVFWIFKLITGKEGMGYGDFKLLAMLGAWGGWQILPLTLLLSSLVG
AVVGVVMLRMRNAPASTQIPFGPYLAIAGWIALLWGGQITDFYWHSVGF
Nucleotide
Download Length: 870 bp
>NTDB_id=409077 E3Z27_RS24025 WP_047698305.1 5526657..5527526(+) (pilD) [Pseudomonas mediterranea strain S58]
ATGCCCCTGAGCGAATTTTTCGTGCTTTATCCCATGGCCTTCGTGCTGACAGCGCTTTTGCTCGGGCTGATCGTCGGCAG
CTTCCTCAATGTCCTGGTGTGGCGCCTGCCCAAGATGCTCACCCGGGAATGGCGACTACAGGCCCACGACCTGCTGGGCC
TGCCTGCCGAAACGCCCGGCCCGGTCTACAACCTGATGCTGCCCCATTCCCAATGCCCTCACTGCGGCCACCGTATCCGG
GCCTGGGAAAATATCCCGTTGTTCAGCTACCTCGCACTGCATGGCCGCTGTTCCAGTTGCGCCACCCCCATCGGGCGCCG
TTACCCTCTTACCGAGCTGGCCTGCGGCGCACTGTCGGCATTCGTCGCCTGGCATTTCGGCTTCGGTTGGCAGGCCGCGC
TGGTGATGGTCCTGAGCTGGGGCCTGCTGGGCATGAGCCTGATCGATGCCGAGCATCAACTGCTGCCCGATACACTGGTG
CTGCCGTTATTGTGGCTGGGGCTGATCGTCAACAGCTTCGGGCTGTTCGTCTCGCTGAACCAGGCGATGTGGGGCGCAGT
GGCCGGCTACCTGACGTTGTGGTCGGTGTTCTGGATCTTCAAGTTGATCACCGGCAAGGAAGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCGATGCTCGGGGCCTGGGGCGGCTGGCAGATCCTGCCACTGACGCTGCTGCTGTCGTCGCTGGTGGGC
GCCGTGGTCGGGGTCGTCATGTTGCGCATGCGCAATGCTCCGGCGTCGACACAGATCCCCTTCGGCCCCTATTTGGCCAT
TGCCGGCTGGATTGCCTTGCTCTGGGGTGGTCAAATAACCGACTTCTATTGGCACTCTGTCGGTTTCTAA
ATGCCCCTGAGCGAATTTTTCGTGCTTTATCCCATGGCCTTCGTGCTGACAGCGCTTTTGCTCGGGCTGATCGTCGGCAG
CTTCCTCAATGTCCTGGTGTGGCGCCTGCCCAAGATGCTCACCCGGGAATGGCGACTACAGGCCCACGACCTGCTGGGCC
TGCCTGCCGAAACGCCCGGCCCGGTCTACAACCTGATGCTGCCCCATTCCCAATGCCCTCACTGCGGCCACCGTATCCGG
GCCTGGGAAAATATCCCGTTGTTCAGCTACCTCGCACTGCATGGCCGCTGTTCCAGTTGCGCCACCCCCATCGGGCGCCG
TTACCCTCTTACCGAGCTGGCCTGCGGCGCACTGTCGGCATTCGTCGCCTGGCATTTCGGCTTCGGTTGGCAGGCCGCGC
TGGTGATGGTCCTGAGCTGGGGCCTGCTGGGCATGAGCCTGATCGATGCCGAGCATCAACTGCTGCCCGATACACTGGTG
CTGCCGTTATTGTGGCTGGGGCTGATCGTCAACAGCTTCGGGCTGTTCGTCTCGCTGAACCAGGCGATGTGGGGCGCAGT
GGCCGGCTACCTGACGTTGTGGTCGGTGTTCTGGATCTTCAAGTTGATCACCGGCAAGGAAGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCGATGCTCGGGGCCTGGGGCGGCTGGCAGATCCTGCCACTGACGCTGCTGCTGTCGTCGCTGGTGGGC
GCCGTGGTCGGGGTCGTCATGTTGCGCATGCGCAATGCTCCGGCGTCGACACAGATCCCCTTCGGCCCCTATTTGGCCAT
TGCCGGCTGGATTGCCTTGCTCTGGGGTGGTCAAATAACCGACTTCTATTGGCACTCTGTCGGTTTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilD | Vibrio cholerae strain A1552 |
52.113 |
98.27 |
0.512 |
| pilD | Vibrio campbellii strain DS40M4 |
49.474 |
98.616 |
0.488 |
| pilD | Neisseria gonorrhoeae MS11 |
46.341 |
99.308 |
0.46 |
| pilD | Acinetobacter baumannii D1279779 |
46.263 |
97.232 |
0.45 |
| pilD | Acinetobacter nosocomialis M2 |
46.263 |
97.232 |
0.45 |