Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   E3Z27_RS24110 Genome accession   NZ_CP046874
Coordinates   5540692..5542281 (+) Length   529 a.a.
NCBI ID   WP_047698324.1    Uniprot ID   -
Organism   Pseudomonas mediterranea strain S58     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5535692..5547281
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E3Z27_RS24095 (E3Z27_24105) pgeF 5537492..5538217 (-) 726 WP_047698319.1 peptidoglycan editing factor PgeF -
  E3Z27_RS24100 (E3Z27_24110) rluD 5538214..5539176 (-) 963 WP_047698321.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  E3Z27_RS24105 (E3Z27_24115) - 5539327..5540343 (+) 1017 WP_047698322.1 outer membrane protein assembly factor BamD -
  E3Z27_RS28890 - 5540469..5540702 (+) 234 WP_081993193.1 PP0621 family protein -
  E3Z27_RS24110 (E3Z27_24120) pilS 5540692..5542281 (+) 1590 WP_047698324.1 two-component system sensor histidine kinase NtrB Regulator
  E3Z27_RS24115 (E3Z27_24125) pilR 5542278..5543621 (+) 1344 WP_055127682.1 sigma-54-dependent transcriptional regulator Regulator
  E3Z27_RS28610 (E3Z27_24130) - 5543956..5544213 (-) 258 WP_159285997.1 hypothetical protein -
  E3Z27_RS24125 (E3Z27_24135) thiO 5544457..5545563 (-) 1107 WP_159285998.1 glycine oxidase ThiO -
  E3Z27_RS24130 (E3Z27_24140) - 5545620..5546022 (-) 403 Protein_4820 type IV pilin protein -

Sequence

Protein


Download         Length: 529 a.a.        Molecular weight: 58583.29 Da        Isoelectric Point: 7.3779

>NTDB_id=409078 E3Z27_RS24110 WP_047698324.1 5540692..5542281(+) (pilS) [Pseudomonas mediterranea strain S58]
MITEASSPRVRQTQRLLRLYHLYRLSIGITLVLLISSNMDNRLLAFANDDLLRSGSWLYLVLNILLVVFLENTRRPARLF
GLALTDVLLLSWLFFVAGGAPSAIGNLLIVSVAIGNTLLRGRIGLLIAAVATIGIVGSSFFLGLNDSNPPGSYLQAGTLG
ALCFAAALLVQGLTRRLEASETLAERRASEVTSLETLNALILQRMRTGILVLDRQRRVQLANESALNLLGMHDLVGQPID
DYSTALVDSLKGWLNNPSLRPPSLTVTGSGLTLQPSFIALGHNEQHQTLVFLEDLAQVAQHAQQLKLASLGRLTAGIAHE
IRNPLGAISHAAQLLRESEELNDADRRLTQIIQDHSQRMNRVIENVLQLSRRQQTSPQRLDLRAWLEQFVQQARESMAAH
QQLHLSIAPGDYVTLMDPDQLTQVLDNLLRNAWRHSAQAHEQAEAWLELFVDPYSRLPMLDILDNGPGVTPDQQAHLFEP
FFTTSSQGTGLGLYLSRELCESNQARLDFKPRQGGGCFRITFAHGRKQI

Nucleotide


Download         Length: 1590 bp        

>NTDB_id=409078 E3Z27_RS24110 WP_047698324.1 5540692..5542281(+) (pilS) [Pseudomonas mediterranea strain S58]
GTGATCACTGAGGCTTCAAGCCCCCGCGTCAGACAGACGCAGCGCCTGCTGCGTCTCTATCACCTGTACCGCTTGAGCAT
CGGCATCACCCTGGTGCTGCTGATTTCCAGCAACATGGACAACCGCCTGCTGGCCTTCGCCAACGACGACCTGCTGCGCA
GTGGCAGTTGGTTGTACCTGGTACTGAACATCCTGCTGGTGGTGTTCCTGGAAAACACCCGCCGCCCGGCCCGGCTGTTC
GGCCTGGCGCTCACCGACGTGCTGCTGCTGTCGTGGCTGTTCTTCGTCGCGGGCGGTGCCCCCAGTGCCATCGGCAACCT
GCTCATCGTCTCGGTGGCCATCGGCAATACGCTGTTGCGCGGCCGGATCGGCCTGTTGATCGCCGCGGTCGCCACGATCG
GCATCGTCGGCTCTAGTTTCTTCCTTGGCCTGAACGACTCGAACCCTCCCGGCAGCTATTTGCAGGCCGGTACCCTCGGT
GCGCTGTGCTTTGCCGCCGCGCTGCTGGTGCAGGGCCTGACCCGACGACTGGAAGCCAGCGAAACCCTGGCCGAGCGGCG
GGCCAGCGAGGTGACCAGCCTGGAAACCCTCAACGCCTTGATCCTGCAACGCATGCGCACCGGCATCCTGGTGCTCGATC
GTCAACGCCGGGTGCAACTGGCCAACGAAAGCGCCTTGAACCTGTTGGGCATGCACGACCTGGTCGGCCAGCCAATCGAT
GACTACTCCACCGCCCTCGTCGACAGCCTGAAAGGATGGCTGAACAACCCCAGCCTGCGCCCACCCAGCCTGACCGTCAC
CGGCAGCGGCCTGACCCTGCAGCCGAGCTTCATCGCCCTGGGGCACAACGAGCAGCATCAGACCCTGGTGTTTCTCGAAG
ACCTGGCCCAGGTGGCCCAACATGCCCAACAACTGAAACTCGCCTCGCTGGGGCGCCTCACTGCCGGCATCGCCCATGAA
ATCCGCAACCCCCTGGGGGCAATCAGCCACGCGGCGCAATTACTGCGCGAGTCCGAGGAACTGAACGACGCCGACCGGCG
TCTGACGCAGATTATTCAAGACCACTCCCAACGAATGAATCGCGTCATTGAAAACGTCCTGCAACTGTCCCGGCGCCAGC
AAACCTCGCCTCAACGCCTGGACCTGCGGGCCTGGCTCGAACAGTTCGTCCAACAGGCCCGCGAAAGCATGGCCGCGCAC
CAGCAATTGCATCTGAGCATCGCCCCGGGCGACTACGTCACGCTCATGGACCCCGATCAATTGACCCAGGTGCTCGACAA
CCTGCTACGCAATGCCTGGCGCCACAGTGCCCAGGCCCATGAACAGGCCGAGGCCTGGCTGGAACTGTTCGTCGATCCCT
ACAGCCGCTTGCCCATGCTGGACATCCTCGACAACGGCCCCGGCGTGACACCGGACCAGCAGGCGCACCTGTTCGAACCG
TTCTTCACCACCAGCAGCCAGGGCACAGGCCTTGGGCTCTATCTGTCCCGTGAGCTGTGCGAAAGCAACCAGGCCCGCCT
AGACTTCAAACCACGCCAAGGCGGCGGCTGCTTTCGCATCACCTTTGCTCACGGACGGAAACAGATTTGA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(309-374)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-522)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

60.348

97.732

0.59

Multiple sequence alignment