Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   GPM17_RS26340 Genome accession   NZ_CP046872
Coordinates   5786583..5788073 (+) Length   496 a.a.
NCBI ID   WP_185279827.1    Uniprot ID   -
Organism   Pseudomonas putida strain MX-2     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5781583..5793073
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPM17_RS26320 (GPM17_26220) glnK 5782819..5783157 (-) 339 WP_002555808.1 P-II family nitrogen regulator -
  GPM17_RS26325 (GPM17_26225) - 5783677..5783943 (+) 267 WP_003253640.1 accessory factor UbiK family protein -
  GPM17_RS26330 (GPM17_26230) - 5783944..5784297 (+) 354 WP_185279825.1 gamma-glutamylcyclotransferase family protein -
  GPM17_RS26335 (GPM17_26235) - 5784251..5786320 (-) 2070 WP_260441431.1 DUF4034 domain-containing protein -
  GPM17_RS26340 (GPM17_26240) comM 5786583..5788073 (+) 1491 WP_185279827.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  GPM17_RS26345 (GPM17_26245) - 5788141..5788509 (-) 369 WP_173881306.1 response regulator transcription factor -
  GPM17_RS26350 (GPM17_26250) - 5788506..5789498 (-) 993 WP_185279828.1 response regulator -

Sequence

Protein


Download         Length: 496 a.a.        Molecular weight: 53016.98 Da        Isoelectric Point: 7.8840

>NTDB_id=409058 GPM17_RS26340 WP_185279827.1 5786583..5788073(+) (comM) [Pseudomonas putida strain MX-2]
MSLALVHSRAQVGVQAPAVSVETHLANGLPHLTLVGLPETTVKESKDRVRSAIVNSGLKYPQRRITQNLAPADLPKDGGR
YDLAIALGILAADGQVPIATLADMECLGELALSGKLRPVQGVLPAALAAREAGRALVVPRENAEEASLAGGLVVYAVGHL
LELVAHLNGQVPLPPYAANGLILQQRPYPDLSEVQGQLAAKRALLLAAAGAHNLLFTGPPGTGKTLLASRLPGLLPPLDE
HEALEVAAIQSVSGKAPLNSWPQRPFRHPHHSASGPALVGGGSRPQPGEITLAHHGVLFLDELPEFERRVLEVLREPLES
GEIVIARARDKVRFPARFQLVAAMNPCPCGYLGDPTGRCRCSTEQIARYRNKLSGPLLDRIDLHLTVARESTTLNNQPCG
ETSADVAVRVAEARELQHRRQGCANAFLDLEGLRHHCGLVAADQVWLEGACERLTLSLRAAHRLLKVARTLADLEGCEKI
GRTHLAEALQYRPGSS

Nucleotide


Download         Length: 1491 bp        

>NTDB_id=409058 GPM17_RS26340 WP_185279827.1 5786583..5788073(+) (comM) [Pseudomonas putida strain MX-2]
ATGTCTCTAGCTCTCGTCCACAGCCGCGCCCAGGTAGGCGTGCAGGCACCGGCGGTCAGCGTCGAAACCCACCTGGCCAA
CGGCCTGCCTCATCTCACCCTGGTCGGCCTGCCGGAAACCACGGTCAAGGAAAGCAAGGACCGGGTGCGCAGCGCCATCG
TCAACTCCGGGCTGAAGTACCCGCAGCGGCGCATTACCCAGAACCTCGCCCCCGCCGACCTGCCCAAGGATGGCGGCCGA
TATGACCTGGCCATCGCCCTGGGCATCCTCGCCGCCGACGGCCAGGTGCCGATTGCCACCCTGGCCGATATGGAATGCCT
GGGCGAACTGGCGCTGTCGGGGAAATTGCGCCCGGTGCAGGGCGTGCTGCCTGCGGCACTGGCGGCACGCGAAGCAGGCC
GGGCGCTGGTGGTACCACGGGAAAATGCCGAGGAAGCCAGCCTGGCCGGCGGGTTGGTGGTGTATGCGGTGGGCCACCTG
CTGGAGTTGGTCGCCCACCTGAACGGCCAGGTGCCGCTGCCGCCCTACGCAGCCAACGGCCTGATCCTGCAGCAACGCCC
CTACCCGGACCTGAGCGAAGTGCAGGGCCAACTGGCAGCCAAGCGTGCCTTGCTGCTGGCTGCGGCCGGGGCGCACAACC
TGTTGTTCACCGGGCCGCCCGGCACCGGCAAGACCTTGCTCGCCAGCCGCCTGCCCGGGCTGCTGCCACCGCTGGACGAG
CACGAAGCGCTGGAAGTGGCGGCAATCCAGTCGGTCAGCGGGAAAGCGCCGCTGAACAGCTGGCCACAGCGCCCCTTTCG
CCATCCCCATCACTCTGCGTCCGGCCCGGCGCTGGTCGGTGGCGGTAGCCGACCGCAACCAGGTGAAATCACGCTCGCCC
ATCACGGCGTGTTGTTTCTCGACGAACTTCCGGAGTTTGAGCGGCGCGTACTGGAAGTGCTTCGCGAGCCACTGGAGTCA
GGTGAAATCGTGATTGCCCGTGCCCGCGACAAAGTGCGTTTCCCCGCGCGCTTCCAGCTGGTGGCGGCGATGAACCCCTG
CCCTTGCGGCTACCTGGGCGACCCCACTGGCCGCTGCCGCTGCAGCACCGAGCAGATCGCGCGCTATCGCAACAAGCTGT
CCGGGCCACTGCTGGACCGCATCGACCTGCACCTGACCGTGGCTCGCGAGAGCACTACATTGAACAACCAGCCTTGCGGA
GAAACCAGTGCCGATGTCGCCGTCAGGGTGGCTGAAGCGCGGGAGCTGCAGCACAGGCGACAAGGGTGTGCGAATGCATT
TCTCGACCTTGAAGGTTTAAGGCATCACTGTGGGTTGGTAGCGGCGGACCAAGTCTGGCTGGAAGGGGCCTGCGAGCGGC
TGACCTTGTCGCTACGCGCGGCGCACCGGTTGTTGAAGGTGGCGCGGACGTTGGCGGACCTGGAGGGATGCGAGAAGATT
GGCCGGACGCACCTGGCCGAGGCCCTGCAGTACCGGCCGGGGAGCAGTTAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

56.048

100

0.56
  comM Haemophilus influenzae Rd KW20

55.4

100

0.558
  comM Vibrio cholerae strain A1552

55.556

99.798

0.554
  comM Glaesserella parasuis strain SC1401

54.291

100

0.548
  comM Legionella pneumophila str. Paris

49.597

100

0.496
  comM Legionella pneumophila strain ERS1305867

49.597

100

0.496
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

47.61

100

0.482

Multiple sequence alignment