Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | GO174_RS15165 | Genome accession | NZ_CP046857 |
| Coordinates | 3185910..3186440 (+) | Length | 176 a.a. |
| NCBI ID | WP_020332215.1 | Uniprot ID | S7JBV3 |
| Organism | Vibrio fluvialis strain 2015AW-0233 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 3180910..3191440
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GO174_RS15150 | uvrA | 3181020..3183842 (-) | 2823 | WP_158125685.1 | excinuclease ABC subunit UvrA | - |
| GO174_RS15155 | galU | 3183980..3184849 (-) | 870 | WP_158125686.1 | UTP--glucose-1-phosphate uridylyltransferase GalU | - |
| GO174_RS15160 | qstR | 3184977..3185627 (-) | 651 | WP_158125687.1 | LuxR C-terminal-related transcriptional regulator | Regulator |
| GO174_RS15165 | ssb | 3185910..3186440 (+) | 531 | WP_020332215.1 | single-stranded DNA-binding protein | Machinery gene |
| GO174_RS15170 | csrD | 3186576..3188570 (+) | 1995 | WP_020433244.1 | RNase E specificity factor CsrD | - |
| GO174_RS15175 | - | 3188578..3190026 (+) | 1449 | WP_158125688.1 | MSHA biogenesis protein MshI | - |
| GO174_RS15180 | - | 3190023..3190673 (+) | 651 | WP_158125689.1 | MSHA biogenesis protein MshJ | - |
| GO174_RS15185 | - | 3190699..3190977 (+) | 279 | WP_172560579.1 | MSHA biogenesis protein MshK | - |
Sequence
Protein
Download Length: 176 a.a. Molecular weight: 19526.69 Da Isoelectric Point: 5.7626
>NTDB_id=409017 GO174_RS15165 WP_020332215.1 3185910..3186440(+) (ssb) [Vibrio fluvialis strain 2015AW-0233]
MATRGVNKVILVGNLGSDPEVRYMPSGGAVANITVATSESWRDKATGEQREKTEWHRVALYGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYSTEIVVQGYNGTMQMLGGRQQGGMPAQGGGMNQPQQGGWGQPQQPAMQQHKPMQQQAPQQSQ
PQYNEPPMDFDDDIPF
MATRGVNKVILVGNLGSDPEVRYMPSGGAVANITVATSESWRDKATGEQREKTEWHRVALYGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYSTEIVVQGYNGTMQMLGGRQQGGMPAQGGGMNQPQQGGWGQPQQPAMQQHKPMQQQAPQQSQ
PQYNEPPMDFDDDIPF
Nucleotide
Download Length: 531 bp
>NTDB_id=409017 GO174_RS15165 WP_020332215.1 3185910..3186440(+) (ssb) [Vibrio fluvialis strain 2015AW-0233]
ATGGCAACCCGTGGCGTGAATAAAGTAATTTTGGTTGGCAACTTGGGTAGTGATCCGGAAGTTCGCTACATGCCAAGCGG
TGGCGCAGTTGCGAACATCACTGTAGCCACGTCAGAATCATGGCGTGATAAAGCAACCGGCGAACAGCGTGAGAAAACAG
AATGGCACCGTGTCGCTCTGTATGGAAAACTCGCAGAAGTCGCAGGTGAGTATCTGCGCAAAGGTTCTCAGGTTTACATC
GAAGGCCAGCTGCAAACACGTAAGTGGCAAGATCAAAGCGGTCAGGACCGCTACTCAACCGAAATCGTTGTACAGGGCTA
CAATGGCACTATGCAGATGCTCGGTGGCCGTCAGCAAGGTGGTATGCCTGCTCAGGGTGGCGGTATGAACCAGCCACAAC
AAGGCGGTTGGGGACAGCCTCAACAACCAGCCATGCAGCAGCACAAACCAATGCAGCAGCAGGCACCGCAGCAATCTCAG
CCGCAATACAATGAACCGCCAATGGATTTTGATGACGACATCCCATTCTAA
ATGGCAACCCGTGGCGTGAATAAAGTAATTTTGGTTGGCAACTTGGGTAGTGATCCGGAAGTTCGCTACATGCCAAGCGG
TGGCGCAGTTGCGAACATCACTGTAGCCACGTCAGAATCATGGCGTGATAAAGCAACCGGCGAACAGCGTGAGAAAACAG
AATGGCACCGTGTCGCTCTGTATGGAAAACTCGCAGAAGTCGCAGGTGAGTATCTGCGCAAAGGTTCTCAGGTTTACATC
GAAGGCCAGCTGCAAACACGTAAGTGGCAAGATCAAAGCGGTCAGGACCGCTACTCAACCGAAATCGTTGTACAGGGCTA
CAATGGCACTATGCAGATGCTCGGTGGCCGTCAGCAAGGTGGTATGCCTGCTCAGGGTGGCGGTATGAACCAGCCACAAC
AAGGCGGTTGGGGACAGCCTCAACAACCAGCCATGCAGCAGCACAAACCAATGCAGCAGCAGGCACCGCAGCAATCTCAG
CCGCAATACAATGAACCGCCAATGGATTTTGATGACGACATCCCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
89.385 |
100 |
0.909 |
| ssb | Glaesserella parasuis strain SC1401 |
55.738 |
100 |
0.58 |
| ssb | Neisseria meningitidis MC58 |
46.739 |
100 |
0.489 |
| ssb | Neisseria gonorrhoeae MS11 |
46.739 |
100 |
0.489 |