Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   GO174_RS15160 Genome accession   NZ_CP046857
Coordinates   3184977..3185627 (-) Length   216 a.a.
NCBI ID   WP_158125687.1    Uniprot ID   -
Organism   Vibrio fluvialis strain 2015AW-0233     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3179977..3190627
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GO174_RS15150 uvrA 3181020..3183842 (-) 2823 WP_158125685.1 excinuclease ABC subunit UvrA -
  GO174_RS15155 galU 3183980..3184849 (-) 870 WP_158125686.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  GO174_RS15160 qstR 3184977..3185627 (-) 651 WP_158125687.1 LuxR C-terminal-related transcriptional regulator Regulator
  GO174_RS15165 ssb 3185910..3186440 (+) 531 WP_020332215.1 single-stranded DNA-binding protein Machinery gene
  GO174_RS15170 csrD 3186576..3188570 (+) 1995 WP_020433244.1 RNase E specificity factor CsrD -
  GO174_RS15175 - 3188578..3190026 (+) 1449 WP_158125688.1 MSHA biogenesis protein MshI -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 24869.63 Da        Isoelectric Point: 9.2330

>NTDB_id=409016 GO174_RS15160 WP_158125687.1 3184977..3185627(-) (qstR) [Vibrio fluvialis strain 2015AW-0233]
MQRANYARTIYYLCLDQTASAPPVLQSAFDLLAIPVPQIEPEQLLQAYQADKHKILLLNYDEHDAIRQRLAPLRLTSPHL
ETILFQVGKRLCTDDLLSFGNLKGLFYQSSEPEQIARGLAEIINGQNWLPRHVSSQLLHYYRHIFQNHHTKATIELTTRE
LQILRSLKTGASNMQMAESLFISEFTVKSHLYQIFKKLSVKNRTQAIAWANQNLLS

Nucleotide


Download         Length: 651 bp        

>NTDB_id=409016 GO174_RS15160 WP_158125687.1 3184977..3185627(-) (qstR) [Vibrio fluvialis strain 2015AW-0233]
ATGCAACGAGCTAACTACGCCCGAACCATATATTACCTCTGTCTGGATCAGACAGCTTCCGCGCCGCCTGTCCTGCAATC
GGCTTTCGACCTACTGGCAATTCCGGTTCCCCAAATCGAACCGGAGCAGTTACTGCAGGCCTATCAGGCTGACAAACATA
AAATCCTGTTACTTAATTATGACGAACATGACGCAATACGCCAGCGGCTGGCACCACTGCGCCTGACCAGTCCGCATCTG
GAAACTATTCTGTTTCAAGTCGGCAAACGTTTGTGTACCGACGACCTGCTCAGTTTCGGCAACCTTAAAGGCTTATTCTA
CCAATCCAGCGAGCCTGAACAGATTGCGCGTGGACTGGCAGAAATCATCAACGGCCAGAATTGGTTGCCTCGTCATGTCA
GTAGCCAACTGTTGCACTACTATCGCCACATTTTTCAGAATCACCATACCAAGGCCACCATCGAACTCACCACGCGAGAA
CTACAGATTTTGCGCAGTCTAAAAACGGGCGCATCAAATATGCAGATGGCAGAAAGCTTATTTATTAGCGAATTTACCGT
CAAATCTCACCTCTATCAGATATTCAAAAAACTCTCGGTGAAAAACCGCACCCAAGCCATCGCCTGGGCGAACCAAAACC
TGCTCTCATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(156-210)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio cholerae strain A1552

69.767

99.537

0.694
  qstR Vibrio campbellii strain DS40M4

53.456

100

0.537
  qstR Vibrio parahaemolyticus RIMD 2210633

52.535

100

0.528

Multiple sequence alignment