Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   GO174_RS13525 Genome accession   NZ_CP046857
Coordinates   2854844..2856367 (+) Length   507 a.a.
NCBI ID   WP_158125556.1    Uniprot ID   -
Organism   Vibrio fluvialis strain 2015AW-0233     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2849844..2861367
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GO174_RS13510 ilvE 2851465..2852406 (-) 942 WP_020332585.1 branched-chain-amino-acid transaminase -
  GO174_RS13515 ilvM 2852418..2852702 (-) 285 WP_014204160.1 acetolactate synthase 2 small subunit -
  GO174_RS13520 ilvG 2852714..2854360 (-) 1647 WP_020332584.1 acetolactate synthase 2 catalytic subunit -
  GO174_RS13525 comM 2854844..2856367 (+) 1524 WP_158125556.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  GO174_RS13530 - 2856471..2857364 (+) 894 WP_158125557.1 acyltransferase -
  GO174_RS13535 - 2857406..2858005 (-) 600 WP_024374484.1 thiol:disulfide interchange protein DsbA/DsbL -
  GO174_RS13540 - 2858036..2859022 (-) 987 WP_047461825.1 serine/threonine protein kinase -
  GO174_RS13545 ccoG 2859067..2860491 (-) 1425 WP_020332579.1 cytochrome c oxidase accessory protein CcoG -
  GO174_RS13550 - 2860753..2861019 (-) 267 WP_020332578.1 DUF1040 family protein -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 55108.12 Da        Isoelectric Point: 8.5030

>NTDB_id=409013 GO174_RS13525 WP_158125556.1 2854844..2856367(+) (comM) [Vibrio fluvialis strain 2015AW-0233]
MGLAIIHSRASIGVQAPAVTVEVHISNGMPGFTLVGLPETTVKESRDRVRSAIINSKFEFPAKRITVNLAPADLPKEGGR
FDLPIALGILAASDQIARTQLSDHEFIGELALSGEIRSVKGVLPAALAANQARRSLVVPHFNGDQAALVGKEQHKSARTL
LEVCADLCGQQTLSLFQSDARDASVPRERDLQDIIGQQQGKRALEIAAAGNHNLLFLGPPGTGKTMLASRLCDLLPEMTE
AEAMETASVASLTQQEINQHNWKQRPFRAPHHSSSMAALVGGGTIPRPGEISLAHNGLLFLDEMPEFERKVLDSLREPLE
SGEIIISRAQGKTRFPARFQLVGALNPSPTGYYEGNQARVNPQGILRYLSRLSGPLLDRFDMSIEIPALPKGTLSHGGDR
GEPTAVVQARVFRARETMLARSGKVNALLQSREIETYCPLSQLDAEFLENALHRLGLSIRAYHRIIKVARTIADLSGEAH
IQRAHLAEALGYRAMDRLLKQLTAQSV

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=409013 GO174_RS13525 WP_158125556.1 2854844..2856367(+) (comM) [Vibrio fluvialis strain 2015AW-0233]
ATGGGGCTTGCTATCATTCATAGCCGTGCCAGCATCGGTGTTCAGGCACCTGCGGTGACGGTGGAAGTACACATCAGTAA
CGGTATGCCGGGGTTTACGCTGGTTGGTTTGCCGGAGACAACCGTCAAAGAATCCCGCGATCGCGTGCGCAGCGCCATCA
TCAATTCCAAGTTTGAATTTCCCGCCAAACGCATTACCGTCAATTTAGCGCCCGCTGATCTGCCCAAAGAGGGCGGCCGT
TTTGATTTGCCGATCGCGCTCGGCATTCTGGCTGCCTCGGATCAGATTGCCCGCACCCAATTGAGCGACCATGAATTCAT
CGGTGAGTTGGCGCTGTCGGGGGAAATTCGCAGCGTGAAAGGCGTGCTGCCCGCAGCCTTGGCGGCCAATCAGGCGCGGC
GCAGTTTGGTGGTACCCCATTTCAATGGCGATCAGGCTGCGCTGGTGGGGAAAGAGCAACATAAATCGGCGCGCACTCTG
CTTGAAGTGTGTGCCGATCTGTGTGGTCAACAGACGTTATCGCTGTTTCAAAGTGACGCGCGCGACGCCAGCGTACCGCG
TGAGCGCGATTTGCAGGACATCATTGGTCAGCAGCAGGGAAAGCGGGCGTTGGAGATAGCAGCGGCGGGCAACCACAACC
TACTGTTTCTTGGCCCGCCGGGCACAGGTAAAACTATGTTGGCCTCGCGTCTGTGCGATCTGCTGCCAGAGATGACTGAG
GCCGAGGCGATGGAGACAGCATCAGTGGCCTCGCTGACGCAGCAGGAAATCAACCAGCACAACTGGAAACAGCGTCCGTT
TCGCGCGCCGCATCATTCCAGCTCCATGGCTGCACTGGTGGGTGGCGGCACTATTCCCCGCCCCGGAGAAATCTCACTTG
CTCACAATGGCCTACTGTTTCTGGATGAAATGCCGGAGTTTGAACGCAAAGTGCTCGATTCACTGCGCGAGCCGCTGGAG
TCGGGCGAGATTATTATTTCCCGCGCGCAGGGCAAAACCCGTTTCCCAGCGCGTTTTCAGTTGGTTGGCGCGCTCAATCC
CAGTCCGACCGGGTATTACGAAGGCAATCAGGCGCGGGTGAATCCGCAGGGGATTTTACGCTATTTGAGCCGTTTGTCGG
GGCCGCTGCTGGATCGCTTTGATATGTCGATCGAAATTCCGGCGTTGCCCAAAGGCACTTTGTCGCACGGCGGCGACCGC
GGCGAGCCGACGGCGGTGGTGCAGGCGCGGGTCTTTCGCGCACGTGAAACCATGCTGGCACGCAGTGGCAAAGTGAATGC
GCTGCTGCAAAGCCGTGAAATCGAAACTTATTGCCCGCTCAGTCAGCTGGATGCGGAATTTCTGGAAAATGCGCTGCACC
GCCTGGGGTTGTCAATCCGGGCCTATCACCGCATCATCAAAGTCGCGCGCACCATTGCCGATTTGAGCGGTGAGGCACAC
ATTCAACGGGCGCACCTGGCCGAAGCGCTCGGGTATCGCGCTATGGACCGGTTACTCAAACAGCTCACCGCCCAATCGGT
CTAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

89.349

100

0.893
  comM Vibrio campbellii strain DS40M4

85.01

100

0.85
  comM Haemophilus influenzae Rd KW20

66.272

100

0.663
  comM Glaesserella parasuis strain SC1401

64.314

100

0.647
  comM Legionella pneumophila str. Paris

49.798

97.83

0.487
  comM Legionella pneumophila strain ERS1305867

49.798

97.83

0.487
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.885

99.803

0.428

Multiple sequence alignment