Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   GPX94_RS02700 Genome accession   NZ_CP046848
Coordinates   579761..580285 (-) Length   174 a.a.
NCBI ID   WP_154114917.1    Uniprot ID   -
Organism   Vibrio cincinnatiensis strain F8054     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 574761..585285
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPX94_RS02680 - 575181..575465 (-) 285 WP_115174067.1 MSHA biogenesis protein MshK -
  GPX94_RS02685 gspM 575482..576135 (-) 654 WP_078926608.1 type II secretion system protein GspM -
  GPX94_RS02690 - 576135..577580 (-) 1446 WP_154114915.1 MSHA biogenesis protein MshI -
  GPX94_RS02695 csrD 577587..579581 (-) 1995 WP_154114916.1 RNase E specificity factor CsrD -
  GPX94_RS02700 ssb 579761..580285 (-) 525 WP_154114917.1 single-stranded DNA-binding protein Machinery gene
  GPX94_RS02705 qstR 580572..581222 (+) 651 WP_078926475.1 LuxR C-terminal-related transcriptional regulator Regulator
  GPX94_RS02710 galU 581463..582332 (+) 870 WP_154114918.1 UTP--glucose-1-phosphate uridylyltransferase GalU -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19392.36 Da        Isoelectric Point: 5.2581

>NTDB_id=408859 GPX94_RS02700 WP_154114917.1 579761..580285(-) (ssb) [Vibrio cincinnatiensis strain F8054]
MATRGVNKVILIGNLGQDPEVRYMPSGDAMVNLTVATSETWRDKATGEQREKTEWHRVSVFGKTAEFIGEYAKKGTQVYI
DGQLQTRKWQDQQGQERYTTEVVVRWPTGEAQILGSRGQQSGSPAQGGMNQGQQSNWGQPQQPAAHSSRPPQQPAASQPQ
YNEPPMDFDDDIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=408859 GPX94_RS02700 WP_154114917.1 579761..580285(-) (ssb) [Vibrio cincinnatiensis strain F8054]
ATGGCAACCCGTGGTGTGAACAAAGTTATCTTGATCGGCAACTTAGGCCAAGATCCAGAGGTTCGCTATATGCCGAGTGG
CGATGCGATGGTCAACTTGACGGTGGCAACTTCAGAAACTTGGCGTGATAAAGCGACCGGCGAACAACGTGAAAAAACAG
AATGGCATCGTGTCTCTGTATTTGGTAAAACCGCTGAATTTATTGGTGAATATGCCAAAAAAGGCACACAAGTCTATATT
GATGGACAACTACAAACTCGTAAATGGCAAGACCAGCAAGGCCAAGAGAGATACACCACTGAGGTTGTCGTTCGTTGGCC
AACAGGTGAAGCTCAGATCTTAGGCAGTCGAGGTCAACAAAGTGGTTCTCCAGCACAAGGTGGCATGAATCAAGGTCAAC
AAAGTAACTGGGGACAGCCACAGCAGCCGGCGGCTCATTCTTCTCGACCACCGCAACAGCCTGCGGCTTCTCAGCCTCAA
TACAATGAACCACCAATGGATTTTGACGACGACATCCCATTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

73.596

100

0.753
  ssb Glaesserella parasuis strain SC1401

51.892

100

0.552
  ssb Neisseria gonorrhoeae MS11

46.328

100

0.471
  ssb Neisseria meningitidis MC58

45.763

100

0.466

Multiple sequence alignment