Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   GPX94_RS02705 Genome accession   NZ_CP046848
Coordinates   580572..581222 (+) Length   216 a.a.
NCBI ID   WP_078926475.1    Uniprot ID   A0A1T4QER8
Organism   Vibrio cincinnatiensis strain F8054     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 575572..586222
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPX94_RS02690 - 576135..577580 (-) 1446 WP_154114915.1 MSHA biogenesis protein MshI -
  GPX94_RS02695 csrD 577587..579581 (-) 1995 WP_154114916.1 RNase E specificity factor CsrD -
  GPX94_RS02700 ssb 579761..580285 (-) 525 WP_154114917.1 single-stranded DNA-binding protein Machinery gene
  GPX94_RS02705 qstR 580572..581222 (+) 651 WP_078926475.1 LuxR C-terminal-related transcriptional regulator Regulator
  GPX94_RS02710 galU 581463..582332 (+) 870 WP_154114918.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  GPX94_RS02715 uvrA 582467..585292 (+) 2826 WP_154114919.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 25166.13 Da        Isoelectric Point: 9.9102

>NTDB_id=408860 GPX94_RS02705 WP_078926475.1 580572..581222(+) (qstR) [Vibrio cincinnatiensis strain F8054]
MPRSNYTRTIYYLTLDEKAATPKILSQAIEQLAIPIPKIEPEQLVNLYQHSKHKILLFDFQEHEQIRQRLAPLKLTSSHL
EIILFNVDKRLHTDTLLSFGHLKGVFYQTETSANLTNGLAEIINGQNWLPRHVSNQLLHYYRYIFQEHQIKATINLTARE
LQILRCLQTGASNMLIAESLFISEFTVKSHLYQIFKKISVKNRTQAIAWANQRILS

Nucleotide


Download         Length: 651 bp        

>NTDB_id=408860 GPX94_RS02705 WP_078926475.1 580572..581222(+) (qstR) [Vibrio cincinnatiensis strain F8054]
ATGCCAAGATCAAATTATACAAGAACCATCTACTACCTTACTTTAGATGAGAAAGCCGCTACCCCAAAGATTCTCAGTCA
AGCAATAGAACAACTTGCTATCCCTATTCCAAAAATTGAACCAGAACAACTCGTCAATCTTTATCAGCACTCAAAACACA
AAATTTTACTCTTTGATTTTCAGGAACACGAACAAATTCGGCAACGTCTTGCTCCCTTAAAACTAACGAGTTCACATCTG
GAAATCATTCTATTTAATGTAGATAAACGTTTACATACAGATACGTTGTTAAGTTTTGGCCATCTGAAAGGCGTTTTTTA
TCAAACAGAAACGTCAGCTAACTTAACAAATGGGCTAGCAGAAATTATCAATGGGCAAAATTGGTTGCCACGCCATGTCT
CTAACCAATTGTTACACTATTACCGTTACATTTTTCAAGAGCATCAAATTAAAGCAACGATTAATCTAACCGCAAGAGAA
CTTCAGATTTTACGCTGCTTACAAACAGGGGCCTCCAATATGCTCATTGCAGAAAGCTTATTCATTAGCGAATTTACGGT
AAAATCCCACCTATACCAAATATTTAAGAAAATATCGGTTAAAAACCGAACCCAAGCAATTGCGTGGGCTAATCAACGTA
TCTTGTCTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(155-210)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1T4QER8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio cholerae strain A1552

67.907

99.537

0.676
  qstR Vibrio campbellii strain DS40M4

51.152

100

0.514
  qstR Vibrio parahaemolyticus RIMD 2210633

50.691

100

0.509

Multiple sequence alignment