Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   SERAS12_RS24255 Genome accession   NC_015566
Coordinates   5250208..5251731 (+) Length   507 a.a.
NCBI ID   WP_013814972.1    Uniprot ID   A0A7U4DZ81
Organism   Serratia sp. AS12     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 5245208..5256731
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SERAS12_RS24235 (SerAS12_4852) ilvE 5245410..5246336 (-) 927 WP_013814968.1 branched-chain-amino-acid transaminase -
  SERAS12_RS24240 (SerAS12_4853) ilvM 5246359..5246616 (-) 258 WP_004951714.1 acetolactate synthase 2 small subunit -
  SERAS12_RS24245 (SerAS12_4854) ilvG 5246613..5248259 (-) 1647 WP_013814969.1 acetolactate synthase 2 catalytic subunit -
  SERAS12_RS25985 (SerAS12_4855) ilvL 5248402..5248500 (-) 99 WP_013814970.1 ilv operon leader peptide -
  SERAS12_RS24250 (SerAS12_4856) - 5248634..5249866 (-) 1233 WP_013814971.1 MFS transporter -
  SERAS12_RS24255 (SerAS12_4857) comM 5250208..5251731 (+) 1524 WP_013814972.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  SERAS12_RS24260 (SerAS12_4858) - 5251759..5252097 (-) 339 WP_004951725.1 DUF413 domain-containing protein -
  SERAS12_RS24265 (SerAS12_4859) hdfR 5252217..5253044 (+) 828 WP_013814973.1 HTH-type transcriptional regulator HdfR -
  SERAS12_RS24270 (SerAS12_4860) yjfF 5253049..5254041 (-) 993 WP_013814974.1 galactofuranose ABC transporter, permease protein YjfF -
  SERAS12_RS24275 (SerAS12_4861) ytfT 5254038..5255060 (-) 1023 WP_143760048.1 galactofuranose ABC transporter, ATP-binding protein YtfT -
  SERAS12_RS24280 (SerAS12_4862) ytfR 5255057..5256571 (-) 1515 WP_013814976.1 galactofuranose ABC transporter, ATP-binding protein YtfR -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 54469.93 Da        Isoelectric Point: 8.0968

>NTDB_id=40881 SERAS12_RS24255 WP_013814972.1 5250208..5251731(+) (comM) [Serratia sp. AS12]
MSLAVIYTRATMGVQAPSVTVEVHISNGLPGLTMVGLPETTVKEARDRVRSALINNGFTFPARRITVNLAPADLPKEGGR
YDLPIALAILAASEQLPADQLARYEFLGELALSGALRGVSGAIPAALAAMDAGRQLILAAANGKEVGLIAQSESRVAEHL
LEVCAFLLGKGVLPVASAPAAAETRQEPADLQDILGQEQAKRALEIAAAGGHNLLLVGPPGTGKTMLASRLNGLLPPLTD
REALESVAVASLLHHPAETLPWRQRPFRAPHHSASMVALVGGGSLPRPGEISMAHNGVLFLDELPEFERRVLDALREPLE
SGEIVISRASAKVCFPARVQLIAAMNPSPTGHYQGMHNRASPQQVLRYLGRLSGPFLDRFDLSIEVPLLPPGVLSKKRTG
GESSIQVRERVLQARERQLCRAGKINALLSNPEVERDCTLSAPDADFLEATLNKLGLSVRAWQRILKVARTLADLAGDRD
IDKRHLSEALGYRCMDRLLLQLHRSLE

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=40881 SERAS12_RS24255 WP_013814972.1 5250208..5251731(+) (comM) [Serratia sp. AS12]
ATGTCACTGGCGGTTATCTATACCCGGGCAACGATGGGCGTTCAGGCCCCTTCGGTGACGGTCGAAGTACATATCAGTAA
CGGGCTACCCGGCCTGACAATGGTCGGCCTGCCGGAAACCACGGTGAAAGAGGCCCGCGATCGGGTACGCAGCGCGTTGA
TCAACAACGGTTTCACCTTTCCCGCCCGACGCATCACCGTCAACCTGGCTCCAGCCGATCTTCCCAAAGAGGGCGGCCGT
TACGATCTGCCTATTGCCCTGGCAATCCTCGCCGCCTCCGAACAGCTGCCGGCCGATCAGCTGGCGCGCTATGAGTTCCT
CGGGGAGCTGGCGCTCTCCGGCGCTCTGCGGGGAGTAAGCGGCGCGATACCGGCCGCGCTGGCGGCAATGGATGCCGGAA
GACAACTGATTCTGGCGGCAGCCAATGGTAAGGAAGTGGGCCTGATTGCACAGAGTGAAAGCCGGGTGGCGGAACATTTG
CTGGAAGTGTGCGCCTTTCTGTTGGGCAAAGGTGTTTTACCGGTGGCCAGCGCCCCAGCCGCCGCCGAAACCCGGCAGGA
ACCCGCCGATCTGCAGGATATTCTGGGCCAGGAACAGGCCAAGCGTGCGCTGGAGATCGCCGCAGCAGGAGGGCATAACC
TGCTGCTGGTCGGCCCGCCGGGTACCGGGAAAACCATGTTGGCCAGCCGCCTGAACGGCCTGCTGCCGCCGCTGACCGAC
CGGGAGGCGCTGGAAAGCGTGGCCGTAGCCAGTCTGCTGCATCACCCTGCCGAAACGCTGCCATGGCGCCAGCGGCCATT
TCGCGCACCGCATCACAGCGCCTCAATGGTCGCGCTGGTTGGCGGTGGCTCACTGCCGCGACCGGGGGAAATCTCCATGG
CGCATAACGGCGTACTGTTTCTGGACGAGTTGCCGGAATTCGAACGGCGCGTGCTGGATGCCCTGCGTGAACCGCTGGAG
TCTGGCGAAATCGTCATTTCACGCGCCAGCGCCAAGGTCTGCTTTCCAGCCAGGGTGCAGTTGATCGCCGCAATGAATCC
CAGCCCGACAGGACACTACCAGGGCATGCATAACCGCGCGTCGCCGCAACAGGTCTTGCGCTATCTCGGGCGGCTTTCAG
GGCCGTTTCTCGATCGTTTCGATTTATCGATTGAGGTGCCGTTGCTGCCGCCAGGCGTGCTCAGTAAAAAGCGCACCGGC
GGAGAAAGCAGCATTCAGGTACGTGAACGGGTATTGCAGGCGCGTGAAAGGCAACTCTGCCGGGCAGGAAAAATCAACGC
CCTGTTGAGTAATCCCGAAGTCGAACGGGATTGTACGCTCAGCGCACCGGATGCCGATTTTCTTGAGGCGACGTTAAACA
AGTTGGGATTATCGGTTCGCGCCTGGCAACGAATTTTAAAAGTGGCACGTACGCTGGCGGATTTGGCGGGGGATCGGGAT
ATTGATAAGCGTCACCTGAGCGAAGCGCTTGGCTACCGCTGTATGGACCGACTGTTGCTGCAGCTGCACCGCAGCCTGGA
ATAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-389)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7U4DZ81

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

66.008

99.803

0.659
  comM Glaesserella parasuis strain SC1401

65.089

100

0.651
  comM Vibrio campbellii strain DS40M4

63.546

99.014

0.629
  comM Vibrio cholerae strain A1552

63.546

99.014

0.629
  comM Legionella pneumophila str. Paris

51.107

98.028

0.501
  comM Legionella pneumophila strain ERS1305867

51.107

98.028

0.501
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.667

100

0.469

Multiple sequence alignment