Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   GPY12_RS02070 Genome accession   NZ_CP046846
Coordinates   428582..429115 (+) Length   177 a.a.
NCBI ID   WP_000235464.1    Uniprot ID   -
Organism   Vibrio mimicus strain F9458     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 423582..434115
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY12_RS02055 uvrA 423621..426443 (-) 2823 WP_000357709.1 excinuclease ABC subunit UvrA -
  GPY12_RS02060 galU 426600..427472 (-) 873 WP_001920788.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  GPY12_RS02065 qstR 427646..428290 (-) 645 WP_005522682.1 LuxR C-terminal-related transcriptional regulator Regulator
  GPY12_RS02070 ssb 428582..429115 (+) 534 WP_000235464.1 single-stranded DNA-binding protein Machinery gene
  GPY12_RS02075 csrD 429293..431251 (+) 1959 WP_022577500.1 RNase E specificity factor CsrD -
  GPY12_RS02080 - 431264..432703 (+) 1440 WP_000743243.1 MSHA biogenesis protein MshI -
  GPY12_RS02085 gspM 432700..433350 (+) 651 WP_148546774.1 type II secretion system protein GspM -
  GPY12_RS02090 - 433343..433660 (+) 318 WP_148546775.1 MSHA biogenesis protein MshK -

Sequence

Protein


Download         Length: 177 a.a.        Molecular weight: 19742.95 Da        Isoelectric Point: 5.7626

>NTDB_id=408809 GPY12_RS02070 WP_000235464.1 428582..429115(+) (ssb) [Vibrio mimicus strain F9458]
MATRGVNKVILIGNLGQDPEVRYMPSGGAVANITIATSETWRDKTTGEQKEKTEWHRVTLYGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQNGQDRYSTEVVVQGYNGIMQMLGGRAQQGGMPAQQGGMNAPQQGGWGQPQQPAKQHQPMQQSAPQQYS
QPQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 534 bp        

>NTDB_id=408809 GPY12_RS02070 WP_000235464.1 428582..429115(+) (ssb) [Vibrio mimicus strain F9458]
ATGGCAACCCGTGGCGTAAACAAAGTAATTTTGATTGGTAACTTAGGCCAAGATCCTGAAGTGCGTTATATGCCAAGCGG
CGGCGCAGTAGCGAATATCACTATCGCGACCTCCGAAACTTGGCGTGACAAAACCACGGGTGAGCAGAAGGAAAAAACCG
AATGGCACCGTGTGACTCTGTATGGAAAGCTGGCAGAAGTTGCTGGTGAGTATCTGCGTAAAGGTTCTCAAGTCTACATT
GAAGGCCAACTGCAAACTCGTAAGTGGCAAGATCAGAATGGTCAAGATCGCTACTCAACTGAAGTGGTTGTACAAGGCTA
CAACGGCATCATGCAGATGCTAGGTGGTCGTGCCCAACAGGGTGGAATGCCAGCTCAGCAAGGCGGCATGAATGCACCAC
AACAAGGTGGTTGGGGACAACCTCAGCAACCAGCGAAACAGCATCAACCGATGCAACAATCGGCACCTCAGCAATACTCG
CAACCGCAGTACAACGAGCCACCGATGGATTTTGATGACGACATCCCATTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

96.067

100

0.966
  ssb Glaesserella parasuis strain SC1401

53.297

100

0.548
  ssb Neisseria gonorrhoeae MS11

46.524

100

0.492
  ssb Neisseria meningitidis MC58

45.745

100

0.486

Multiple sequence alignment