Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   GPY12_RS02065 Genome accession   NZ_CP046846
Coordinates   427646..428290 (-) Length   214 a.a.
NCBI ID   WP_005522682.1    Uniprot ID   -
Organism   Vibrio mimicus strain F9458     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 422646..433290
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY12_RS02055 uvrA 423621..426443 (-) 2823 WP_000357709.1 excinuclease ABC subunit UvrA -
  GPY12_RS02060 galU 426600..427472 (-) 873 WP_001920788.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  GPY12_RS02065 qstR 427646..428290 (-) 645 WP_005522682.1 LuxR C-terminal-related transcriptional regulator Regulator
  GPY12_RS02070 ssb 428582..429115 (+) 534 WP_000235464.1 single-stranded DNA-binding protein Machinery gene
  GPY12_RS02075 csrD 429293..431251 (+) 1959 WP_022577500.1 RNase E specificity factor CsrD -
  GPY12_RS02080 - 431264..432703 (+) 1440 WP_000743243.1 MSHA biogenesis protein MshI -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24770.59 Da        Isoelectric Point: 9.6351

>NTDB_id=408808 GPY12_RS02065 WP_005522682.1 427646..428290(-) (qstR) [Vibrio mimicus strain F9458]
MQRTNYARTIYLLTTQPKALHPSIQAAIEQLNLPVPVIEPERLLREYQSDKHKILLLDHAENSQIRQQLGPLKLTSPYFE
TILFNVDKRLKTEDLLIFGNLKGLFYANEDTGFIAHGLGEIINGQNWLPRHVSSQLLHYYRYAFQTHQTQATVDLTAREI
QILRCLQTGASNMQIAESLFISEFTVKSHLYQIFKKLNVKNRVKAIAWVNQNLL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=408808 GPY12_RS02065 WP_005522682.1 427646..428290(-) (qstR) [Vibrio mimicus strain F9458]
ATGCAACGAACCAATTACGCACGCACCATTTACTTGCTGACCACTCAACCCAAAGCTTTACATCCCTCTATTCAGGCGGC
GATAGAACAACTGAATCTTCCCGTCCCTGTAATTGAGCCGGAGCGTTTACTGCGCGAGTATCAATCCGATAAACACAAAA
TTTTGCTGCTCGATCATGCAGAAAACAGCCAGATCCGCCAGCAACTTGGGCCACTCAAGCTCACTAGCCCCTATTTTGAA
ACCATTCTGTTTAATGTGGATAAACGGCTAAAAACTGAAGACCTACTCATCTTCGGTAACCTAAAAGGGCTTTTTTATGC
TAACGAAGATACTGGTTTTATTGCGCATGGACTTGGGGAAATCATCAATGGCCAGAACTGGTTACCACGCCACGTAAGCA
GCCAGTTATTACACTACTATCGTTACGCTTTCCAAACCCATCAGACTCAGGCTACGGTTGACCTCACCGCACGTGAAATT
CAAATTCTGCGCTGCCTACAGACCGGAGCTTCAAATATGCAAATTGCAGAGAGTTTGTTTATTAGTGAGTTCACGGTGAA
ATCCCATCTCTATCAGATATTTAAAAAGTTGAATGTGAAAAATCGAGTCAAAGCGATTGCCTGGGTAAACCAAAATTTAT
TGTGA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(155-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio cholerae strain A1552

95.794

100

0.958
  qstR Vibrio campbellii strain DS40M4

52.804

100

0.528
  qstR Vibrio parahaemolyticus RIMD 2210633

52.558

100

0.528

Multiple sequence alignment