Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   GPY12_RS00400 Genome accession   NZ_CP046846
Coordinates   74610..76133 (-) Length   507 a.a.
NCBI ID   WP_148545300.1    Uniprot ID   -
Organism   Vibrio mimicus strain F9458     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 69610..81133
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY12_RS00375 - 69950..70216 (+) 267 WP_000649656.1 DUF1040 family protein -
  GPY12_RS00380 ccoG 70481..71905 (+) 1425 WP_148545306.1 cytochrome c oxidase accessory protein CcoG -
  GPY12_RS00385 - 71953..72939 (+) 987 WP_000189610.1 serine/threonine protein kinase -
  GPY12_RS00390 - 72971..73576 (+) 606 WP_148545304.1 thiol:disulfide interchange protein DsbA/DsbL -
  GPY12_RS00395 - 73638..74519 (-) 882 WP_148545302.1 acyltransferase -
  GPY12_RS00400 comM 74610..76133 (-) 1524 WP_148545300.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  GPY12_RS00405 ilvG 76666..78311 (+) 1646 Protein_71 acetolactate synthase 2 catalytic subunit -
  GPY12_RS00410 ilvM 78323..78607 (+) 285 WP_001190201.1 acetolactate synthase 2 small subunit -
  GPY12_RS00415 ilvE 78619..79557 (+) 939 WP_000202000.1 branched-chain-amino-acid transaminase -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 54973.09 Da        Isoelectric Point: 8.3602

>NTDB_id=408804 GPY12_RS00400 WP_148545300.1 74610..76133(-) (comM) [Vibrio mimicus strain F9458]
MGLAIIHSRASIGVQAPPVTVEVHISNGMPGFTLVGLPETTVKESRDRVRSAIINSRFEFPAKRITVNLAPADLPKEGGR
FDLPIALGILAASDQIARTKLENYEFIGELALSGEIRGVKGVLPAALAANQVNRCLVVPHSNGDQAALVGSERHKSAQSL
LEVCADLCGQQNLSLFQSAPSVLEIPTTRDLQDIIGQQQGKRALEIAAAGNHNLLFLGPPGTGKTMLASRLCDLLPEMSD
EEAMETASIASLTQQEINQHNWKLRPFRSPHHSSSMAALVGGGTIPRPGEISLAHNGLLFLDEMPEFERKVLDSLREPLE
SGEIVISRAQGKTRFPARFQLVGALNPSPTGYYEGSQARANPQSILRYLSRLSGPLLDRFDMSIEIPALPKGTLANGGDR
GESTAAVRQRVLAARERMLVRSGKVNALLQSREIEQYCPLVKADAEFLESALHRLGLSIRAYHRIIKVARTIADLQGEAQ
IARPHLAEALGYRAMDRLLKQLSAQNV

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=408804 GPY12_RS00400 WP_148545300.1 74610..76133(-) (comM) [Vibrio mimicus strain F9458]
ATGGGACTTGCGATCATTCACAGCCGCGCCAGTATTGGCGTGCAGGCTCCTCCGGTTACGGTTGAGGTTCACATCAGTAA
TGGTATGCCGGGTTTCACCTTGGTTGGTCTGCCGGAAACTACAGTGAAAGAGTCGCGGGATCGAGTTCGTAGCGCGATCA
TTAACTCTCGATTTGAGTTTCCGGCGAAACGCATTACGGTCAATTTAGCCCCTGCCGATCTGCCCAAAGAGGGTGGGCGT
TTTGATCTTCCAATTGCACTTGGAATTTTGGCCGCCTCGGATCAAATTGCGCGAACTAAGCTTGAAAATTACGAATTTAT
CGGTGAATTGGCACTATCGGGTGAGATTCGTGGTGTGAAAGGGGTATTGCCTGCCGCACTCGCTGCTAATCAAGTCAATC
GCTGTTTAGTGGTACCACACAGTAATGGTGATCAGGCTGCGTTGGTGGGGAGTGAACGGCATAAATCTGCGCAAAGCTTA
TTGGAAGTATGTGCCGATCTGTGTGGACAGCAGAACCTGTCGCTGTTTCAAAGTGCACCAAGTGTGTTGGAGATACCAAC
TACCCGCGATTTACAGGATATTATTGGTCAGCAACAGGGTAAGCGTGCGTTGGAAATTGCAGCGGCAGGAAACCATAACC
TGCTGTTTTTAGGTCCTCCGGGTACGGGTAAAACCATGCTTGCTTCGCGCCTGTGCGATTTATTGCCGGAAATGAGTGAC
GAAGAGGCGATGGAAACGGCATCGATCGCGTCCCTCACGCAGCAAGAAATTAACCAACATAACTGGAAATTGCGCCCTTT
TCGTTCGCCACACCATTCAAGCTCAATGGCGGCTTTAGTGGGGGGCGGCACCATTCCGCGCCCCGGTGAAATTTCTCTCG
CCCATAATGGGCTGCTGTTTTTGGACGAAATGCCGGAGTTTGAGCGCAAAGTACTGGATTCTCTGCGTGAACCGTTGGAA
TCGGGTGAGATTGTGATTTCTCGTGCGCAAGGCAAAACTCGTTTTCCGGCGCGCTTTCAATTGGTCGGCGCGTTAAATCC
AAGCCCAACCGGCTATTACGAGGGCAGTCAGGCACGTGCTAATCCGCAGAGTATTCTGCGCTATTTGAGTCGGCTCTCTG
GCCCTTTGTTGGATCGCTTTGATATGTCGATAGAGATCCCAGCCTTACCAAAGGGCACCTTGGCCAATGGTGGTGATCGT
GGTGAATCCACCGCGGCTGTGCGTCAGCGAGTGTTGGCTGCTCGGGAGCGAATGCTTGTACGTTCTGGTAAGGTGAATGC
CTTGCTGCAAAGCCGAGAAATTGAACAATATTGTCCTTTGGTCAAAGCTGATGCCGAGTTTTTGGAAAGTGCGCTCCATC
GCTTGGGTTTATCTATCCGTGCTTACCACCGCATCATCAAAGTAGCGCGAACCATTGCTGATTTGCAAGGTGAAGCGCAG
ATTGCTCGGCCACATCTGGCGGAGGCGTTAGGTTATCGAGCGATGGATAGGCTACTCAAGCAACTGAGTGCGCAGAATGT
CTAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

96.844

100

0.968
  comM Vibrio campbellii strain DS40M4

85.039

100

0.852
  comM Haemophilus influenzae Rd KW20

67.061

100

0.671
  comM Glaesserella parasuis strain SC1401

64.706

100

0.651
  comM Legionella pneumophila str. Paris

51.21

97.83

0.501
  comM Legionella pneumophila strain ERS1305867

51.21

97.83

0.501
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.701

100

0.438

Multiple sequence alignment