Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   GPY13_RS09745 Genome accession   NZ_CP046823
Coordinates   2144160..2144471 (-) Length   103 a.a.
NCBI ID   WP_001159857.1    Uniprot ID   A0A2J9UX92
Organism   Vibrio mimicus strain 06-2455     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2139160..2149471
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY13_RS09720 lapB 2139389..2140558 (-) 1170 WP_000889969.1 lipopolysaccharide assembly protein LapB -
  GPY13_RS09725 - 2140571..2140852 (-) 282 WP_000691486.1 LapA family protein -
  GPY13_RS09730 ihfB 2140997..2141275 (-) 279 WP_000167340.1 integration host factor subunit beta -
  GPY13_RS09735 rpsA 2141528..2143198 (-) 1671 WP_000140311.1 30S ribosomal protein S1 -
  GPY13_RS09740 cmk 2143307..2143984 (-) 678 WP_000100580.1 (d)CMP kinase -
  GPY13_RS09745 comEA 2144160..2144471 (-) 312 WP_001159857.1 helix-hairpin-helix domain-containing protein Machinery gene
  GPY13_RS09750 ppiD 2144607..2146466 (-) 1860 WP_000969329.1 peptidylprolyl isomerase -
  GPY13_RS09755 - 2146619..2146891 (-) 273 WP_001044516.1 HU family DNA-binding protein -
  GPY13_RS09760 lon 2147067..2149436 (-) 2370 WP_001047616.1 endopeptidase La -

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 11045.92 Da        Isoelectric Point: 4.7228

>NTDB_id=408458 GPY13_RS09745 WP_001159857.1 2144160..2144471(-) (comEA) [Vibrio mimicus strain 06-2455]
MQFKTTLMTVLLSLCLPAMPMLVSAEETNPTAQTEEGIVITVNINTASAEELATLLKGIGLKKAQAIVDYREANGPFISI
DDLTKVKGIGEATVRNNATRILL

Nucleotide


Download         Length: 312 bp        

>NTDB_id=408458 GPY13_RS09745 WP_001159857.1 2144160..2144471(-) (comEA) [Vibrio mimicus strain 06-2455]
ATGCAATTCAAAACAACACTTATGACAGTTCTGCTTTCACTCTGTTTACCAGCCATGCCTATGCTGGTTAGTGCTGAGGA
AACAAACCCGACTGCGCAAACTGAAGAAGGTATTGTCATTACTGTGAATATCAATACGGCTTCGGCAGAAGAGCTTGCCA
CTTTGCTAAAAGGTATCGGGCTTAAAAAAGCACAGGCGATTGTCGATTATCGTGAGGCTAATGGTCCTTTTATCAGCATC
GACGATCTGACGAAGGTGAAAGGCATTGGTGAAGCAACCGTACGCAACAACGCGACTCGCATATTGCTGTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(41-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2J9UX92

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Vibrio cholerae C6706

82.524

100

0.825
  comEA Vibrio cholerae strain A1552

82.524

100

0.825
  comEA Vibrio campbellii strain DS40M4

60.825

94.175

0.573
  comEA Vibrio parahaemolyticus RIMD 2210633

61.458

93.204

0.573
  comE1/comEA Haemophilus influenzae Rd KW20

40.179

100

0.437

Multiple sequence alignment