Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   GPY13_RS02095 Genome accession   NZ_CP046823
Coordinates   435697..436230 (+) Length   177 a.a.
NCBI ID   WP_000235465.1    Uniprot ID   A0A2J9V0J8
Organism   Vibrio mimicus strain 06-2455     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 430697..441230
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY13_RS02080 uvrA 430737..433559 (-) 2823 WP_000357708.1 excinuclease ABC subunit UvrA -
  GPY13_RS02085 galU 433715..434587 (-) 873 WP_001920788.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  GPY13_RS02090 qstR 434761..435405 (-) 645 WP_001189893.1 LuxR C-terminal-related transcriptional regulator Regulator
  GPY13_RS02095 ssb 435697..436230 (+) 534 WP_000235465.1 single-stranded DNA-binding protein Machinery gene
  GPY13_RS02100 csrD 436408..438366 (+) 1959 WP_000216150.1 RNase E specificity factor CsrD -
  GPY13_RS02105 - 438379..439818 (+) 1440 WP_000743243.1 MSHA biogenesis protein MshI -
  GPY13_RS02110 gspM 439815..440465 (+) 651 WP_000986916.1 type II secretion system protein GspM -
  GPY13_RS02115 - 440458..440775 (+) 318 WP_000252815.1 hypothetical protein -

Sequence

Protein


Download         Length: 177 a.a.        Molecular weight: 19732.91 Da        Isoelectric Point: 5.7626

>NTDB_id=408439 GPY13_RS02095 WP_000235465.1 435697..436230(+) (ssb) [Vibrio mimicus strain 06-2455]
MATRGVNKVILIGNLGQDPEVRYMPSGGAVANITIATSETWRDKTTGEQKEKTEWHRVTLYGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQNGQDRYSTEVVVQGYNGIMQMLGGRAQQGGMPAQQGGMNAPQQGGWGQPQQPAKQHQPMQQSASQQYS
QPQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 534 bp        

>NTDB_id=408439 GPY13_RS02095 WP_000235465.1 435697..436230(+) (ssb) [Vibrio mimicus strain 06-2455]
ATGGCAACCCGTGGCGTAAACAAAGTAATTTTGATTGGTAACTTAGGCCAAGATCCTGAAGTGCGTTATATGCCAAGCGG
CGGCGCAGTAGCGAATATCACTATCGCGACCTCCGAAACTTGGCGTGACAAAACCACGGGTGAGCAGAAGGAAAAAACCG
AATGGCACCGCGTGACTCTGTATGGAAAGCTGGCAGAAGTTGCTGGTGAGTATCTGCGTAAAGGTTCTCAAGTCTACATT
GAAGGCCAACTGCAAACTCGTAAGTGGCAAGATCAGAATGGTCAAGATCGCTACTCAACTGAAGTGGTTGTACAAGGCTA
CAACGGCATCATGCAGATGCTAGGTGGTCGTGCCCAGCAAGGTGGAATGCCAGCTCAGCAAGGCGGCATGAATGCACCAC
AACAAGGTGGTTGGGGACAACCTCAGCAACCAGCGAAACAGCATCAACCGATGCAACAATCGGCATCTCAGCAGTACTCG
CAACCGCAGTACAACGAGCCGCCGATGGATTTTGATGACGACATCCCATTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2J9V0J8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

95.506

100

0.96
  ssb Glaesserella parasuis strain SC1401

52.381

100

0.559
  ssb Neisseria meningitidis MC58

46.277

100

0.492
  ssb Neisseria gonorrhoeae MS11

46.486

100

0.486

Multiple sequence alignment