Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   GPY13_RS02090 Genome accession   NZ_CP046823
Coordinates   434761..435405 (-) Length   214 a.a.
NCBI ID   WP_001189893.1    Uniprot ID   A0A2J9V0J5
Organism   Vibrio mimicus strain 06-2455     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 429761..440405
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY13_RS02080 uvrA 430737..433559 (-) 2823 WP_000357708.1 excinuclease ABC subunit UvrA -
  GPY13_RS02085 galU 433715..434587 (-) 873 WP_001920788.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  GPY13_RS02090 qstR 434761..435405 (-) 645 WP_001189893.1 LuxR C-terminal-related transcriptional regulator Regulator
  GPY13_RS02095 ssb 435697..436230 (+) 534 WP_000235465.1 single-stranded DNA-binding protein Machinery gene
  GPY13_RS02100 csrD 436408..438366 (+) 1959 WP_000216150.1 RNase E specificity factor CsrD -
  GPY13_RS02105 - 438379..439818 (+) 1440 WP_000743243.1 MSHA biogenesis protein MshI -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24756.56 Da        Isoelectric Point: 9.6351

>NTDB_id=408438 GPY13_RS02090 WP_001189893.1 434761..435405(-) (qstR) [Vibrio mimicus strain 06-2455]
MQRTNYARTIYLLTTQPKALHPSIQAAIEQLNLPVPVIEPERLLREYQSDKHKILLLDHAENSQIRQQLGPLKLTSPYFE
TILFNVDKRLKTEDLLVFGNLKGLFYANEDTGFIAHGLGEIINGQNWLPRHVSSQLLHYYRYAFQTHQTQATVDLTAREI
QILRCLQTGASNMQIAESLFISEFTVKSHLYQIFKKLNVKNRVKAIAWVNQNLL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=408438 GPY13_RS02090 WP_001189893.1 434761..435405(-) (qstR) [Vibrio mimicus strain 06-2455]
ATGCAACGAACCAATTACGCACGCACCATTTACTTGCTGACCACTCAACCCAAAGCTTTACACCCCTCAATTCAGGCGGC
GATCGAACAACTGAATCTTCCCGTCCCTGTGATTGAGCCGGAGCGTTTACTGCGCGAGTATCAATCCGATAAACACAAAA
TTTTGCTGCTCGATCATGCAGAAAACAGCCAAATCCGCCAGCAACTTGGACCACTCAAGCTCACTAGCCCCTATTTTGAA
ACCATTCTATTTAACGTAGACAAACGGCTAAAAACTGAAGACCTACTCGTCTTCGGTAACCTAAAAGGGCTCTTTTATGC
CAACGAAGATACTGGTTTTATTGCGCATGGACTTGGGGAAATCATCAATGGTCAGAACTGGTTACCACGACACGTAAGCA
GCCAGTTATTACACTACTATCGTTACGCTTTCCAAACCCATCAGACTCAGGCAACGGTTGACCTCACCGCACGTGAAATT
CAAATTCTACGCTGCCTACAGACCGGAGCTTCAAATATGCAAATTGCAGAGAGTTTGTTTATTAGTGAGTTCACGGTGAA
ATCCCATCTCTATCAGATATTTAAAAAGTTGAATGTGAAAAATCGAGTCAAAGCGATTGCCTGGGTAAACCAAAATTTAT
TGTGA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(155-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2J9V0J5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio cholerae strain A1552

95.794

100

0.958
  qstR Vibrio campbellii strain DS40M4

52.804

100

0.528
  qstR Vibrio parahaemolyticus RIMD 2210633

52.558

100

0.528

Multiple sequence alignment