Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   GPY13_RS00415 Genome accession   NZ_CP046823
Coordinates   77245..78768 (-) Length   507 a.a.
NCBI ID   WP_000521794.1    Uniprot ID   -
Organism   Vibrio mimicus strain 06-2455     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 72245..83768
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY13_RS00390 - 72585..72851 (+) 267 WP_000649659.1 DUF1040 family protein -
  GPY13_RS00395 ccoG 73116..74540 (+) 1425 WP_000076141.1 cytochrome c oxidase accessory protein CcoG -
  GPY13_RS00400 - 74588..75574 (+) 987 WP_000189610.1 serine/threonine protein kinase -
  GPY13_RS00405 - 75606..76211 (+) 606 WP_000732288.1 thiol:disulfide interchange protein DsbA/DsbL -
  GPY13_RS00410 - 76273..77154 (-) 882 WP_000881898.1 acyltransferase -
  GPY13_RS00415 comM 77245..78768 (-) 1524 WP_000521794.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  GPY13_RS00420 ilvG 79299..80945 (+) 1647 WP_000145270.1 acetolactate synthase 2 catalytic subunit -
  GPY13_RS00425 ilvM 80957..81241 (+) 285 WP_001190201.1 acetolactate synthase 2 small subunit -
  GPY13_RS00430 ilvE 81253..82191 (+) 939 WP_000212002.1 branched-chain-amino-acid transaminase -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 54901.03 Da        Isoelectric Point: 8.6160

>NTDB_id=408434 GPY13_RS00415 WP_000521794.1 77245..78768(-) (comM) [Vibrio mimicus strain 06-2455]
MGLAIIHSRASIGVQAPPVTVEVHISNGMPGFTLVGLPETTVKESRDRVRSAIINSRFEFPAKRITVNLAPADLPKEGGR
FDLPIALGILAASDQIARTKLENYEFIGELALSGEIRGVKGVLPAALAANQVNRCLVVPHSNGDQAALVGSERHKSAQSL
LEVCADLCGQQNLSLFQSAPSVLAVPTTRDLQDIIGQQQGKRALEIAAAGNHNLLFLGPPGTGKTMLASRLCDLLPEMSD
EEAMETASIASLTQQEINQHNWKLRPFRSPHHSSSMAALVGGGTIPRPGEISLAHNGLLFLDEMPEFERKVLDSLREPLE
SGEIVISRAQGKTRFPARFQLVGALNPSPTGYYEGSQARANPQSILRYLSRLSGPLLDRFDMSIEIPALPKGTLANGGDR
GESTAAVRQRVLAARERMLVRSGKVNALLQSREIEQYCPLVKADAEFLESALHRLGLSIRAYHRIIKVARTIADLQGEAQ
IARPHLAEALGYRAMDRLLKQLSAQNV

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=408434 GPY13_RS00415 WP_000521794.1 77245..78768(-) (comM) [Vibrio mimicus strain 06-2455]
ATGGGACTTGCGATCATTCACAGCCGCGCCAGTATTGGCGTGCAGGCTCCTCCGGTTACGGTTGAGGTTCACATCAGTAA
TGGTATGCCGGGTTTCACCTTGGTTGGTCTGCCGGAAACCACAGTGAAAGAGTCGCGGGATCGAGTTCGTAGCGCGATCA
TTAACTCTCGATTTGAGTTTCCGGCGAAACGCATTACGGTCAATTTAGCCCCTGCCGATCTGCCCAAAGAGGGGGGACGT
TTTGATCTTCCAATTGCACTTGGAATTTTGGCCGCCTCGGATCAAATTGCGCGAACTAAGCTTGAAAATTACGAATTTAT
CGGTGAATTGGCACTATCGGGTGAGATTCGTGGTGTGAAAGGGGTATTGCCTGCCGCACTCGCTGCTAATCAAGTCAATC
GCTGTTTAGTGGTACCACACAGTAATGGTGATCAGGCTGCGTTGGTGGGGAGTGAACGGCATAAATCTGCGCAAAGCTTA
TTGGAAGTATGTGCCGATCTGTGTGGCCAGCAGAACCTGTCGCTGTTTCAAAGTGCACCAAGTGTGTTGGCGGTGCCAAC
TACCCGCGATTTACAGGATATTATTGGTCAGCAACAGGGTAAGCGTGCGTTGGAAATTGCAGCGGCAGGAAACCATAACC
TGCTGTTTTTAGGTCCTCCGGGTACGGGTAAAACCATGCTTGCTTCGCGCCTGTGCGATTTATTGCCGGAAATGAGTGAC
GAAGAGGCGATGGAAACGGCATCGATCGCGTCCCTCACGCAGCAAGAAATTAACCAACATAACTGGAAATTGCGCCCTTT
TCGTTCGCCACACCATTCAAGCTCAATGGCGGCTTTAGTCGGGGGTGGCACCATTCCGCGTCCTGGTGAAATTTCTCTTG
CCCATAATGGGCTGCTGTTTTTGGACGAAATGCCGGAGTTTGAGCGCAAAGTACTGGATTCTCTGCGTGAACCGTTGGAA
TCGGGTGAGATTGTGATTTCTCGTGCGCAAGGCAAAACTCGTTTTCCGGCGCGCTTTCAATTGGTCGGCGCGTTAAATCC
AAGCCCAACCGGCTATTACGAGGGCAGTCAGGCACGTGCTAATCCGCAGAGTATTCTGCGCTATTTGAGTCGGCTCTCTG
GCCCTTTGTTGGATCGCTTTGATATGTCGATAGAGATCCCAGCCTTACCAAAGGGCACCTTGGCCAATGGTGGTGATCGT
GGTGAATCCACCGCGGCTGTGCGTCAGCGAGTGTTGGCTGCTCGGGAGCGAATGCTTGTACGTTCTGGTAAGGTGAATGC
CTTGCTGCAAAGCCGAGAAATTGAACAATATTGTCCTTTGGTCAAAGCTGATGCCGAGTTTTTGGAAAGTGCGCTCCATC
GCTTGGGTTTATCTATCCGTGCTTACCACCGCATCATCAAAGTAGCGCGAACCATTGCTGATTTGCAAGGTGAAGCGCAG
ATTGCTCGGCCACATCTGGCGGAGGCGTTAGGTTATCGAGCGATGGATAGGCTACTCAAGCAACTGAGTGCGCAGAATGT
CTAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

97.041

100

0.97
  comM Vibrio campbellii strain DS40M4

84.813

100

0.848
  comM Haemophilus influenzae Rd KW20

67.456

100

0.675
  comM Glaesserella parasuis strain SC1401

64.706

100

0.651
  comM Legionella pneumophila str. Paris

51.21

97.83

0.501
  comM Legionella pneumophila strain ERS1305867

51.21

97.83

0.501
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.504

100

0.436

Multiple sequence alignment