Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   GPX85_RS06680 Genome accession   NZ_CP046822
Coordinates   625875..626393 (+) Length   172 a.a.
NCBI ID   WP_004396114.1    Uniprot ID   A0AAW8GVB6
Organism   Vibrio metschnikovii strain 07-2421     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 620875..631393
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPX85_RS06670 galU 623749..624618 (-) 870 WP_154169290.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  GPX85_RS06675 qstR 624941..625591 (-) 651 WP_158137756.1 LuxR C-terminal-related transcriptional regulator Regulator
  GPX85_RS06680 ssb 625875..626393 (+) 519 WP_004396114.1 single-stranded DNA-binding protein Machinery gene
  GPX85_RS06685 csrD 626539..628530 (+) 1992 WP_158137757.1 RNase E specificity factor CsrD -
  GPX85_RS06690 - 628537..629979 (+) 1443 WP_199249792.1 MSHA biogenesis protein MshI -
  GPX85_RS06695 pilO 629979..630629 (+) 651 WP_158137758.1 type 4a pilus biogenesis protein PilO -
  GPX85_RS06700 - 630622..630939 (+) 318 WP_233268194.1 MSHA biogenesis protein MshK -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18967.94 Da        Isoelectric Point: 5.2358

>NTDB_id=408402 GPX85_RS06680 WP_004396114.1 625875..626393(+) (ssb) [Vibrio metschnikovii strain 07-2421]
MATRGVNKVILVGNLGADPEVRYMASGAAVANITLATSESWRDKTTGEQRERTEWHRVALYGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYTTEVVVQGYNGIMQMLGGRQQGAAPGQGAPQGQQSNWGQPQQPSAQQSPKQSAPQQAQPQYN
EPPMDFDDDIPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=408402 GPX85_RS06680 WP_004396114.1 625875..626393(+) (ssb) [Vibrio metschnikovii strain 07-2421]
ATGGCAACCCGTGGCGTAAATAAAGTAATTTTGGTCGGTAACTTAGGGGCTGACCCTGAAGTTCGCTATATGGCAAGTGG
TGCTGCGGTAGCAAATATCACTCTGGCAACCTCAGAAAGCTGGCGTGATAAAACCACCGGCGAGCAACGTGAAAGAACGG
AATGGCACCGCGTAGCCTTATATGGCAAACTCGCTGAAGTTGCGGGCGAATATTTACGTAAGGGATCGCAGGTTTATATC
GAAGGTCAATTACAAACGCGTAAATGGCAAGATCAGAGCGGCCAAGATCGTTATACCACGGAAGTTGTGGTGCAAGGTTA
TAATGGCATTATGCAAATGTTGGGTGGTCGTCAGCAAGGTGCAGCGCCTGGACAGGGGGCTCCTCAAGGTCAACAAAGTA
ACTGGGGACAGCCACAACAACCTTCAGCGCAGCAATCACCGAAGCAGTCAGCACCTCAGCAAGCTCAGCCACAATATAAT
GAGCCGCCGATGGATTTTGATGACGATATCCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

81.921

100

0.843
  ssb Glaesserella parasuis strain SC1401

50.785

100

0.564
  ssb Neisseria gonorrhoeae MS11

47.753

100

0.494
  ssb Neisseria meningitidis MC58

46.893

100

0.483

Multiple sequence alignment