Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   GPX85_RS06675 Genome accession   NZ_CP046822
Coordinates   624941..625591 (-) Length   216 a.a.
NCBI ID   WP_158137756.1    Uniprot ID   -
Organism   Vibrio metschnikovii strain 07-2421     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 619941..630591
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPX85_RS06665 uvrA 620779..623604 (-) 2826 WP_158137755.1 excinuclease ABC subunit UvrA -
  GPX85_RS06670 galU 623749..624618 (-) 870 WP_154169290.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  GPX85_RS06675 qstR 624941..625591 (-) 651 WP_158137756.1 LuxR C-terminal-related transcriptional regulator Regulator
  GPX85_RS06680 ssb 625875..626393 (+) 519 WP_004396114.1 single-stranded DNA-binding protein Machinery gene
  GPX85_RS06685 csrD 626539..628530 (+) 1992 WP_158137757.1 RNase E specificity factor CsrD -
  GPX85_RS06690 - 628537..629979 (+) 1443 WP_199249792.1 MSHA biogenesis protein MshI -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 25234.04 Da        Isoelectric Point: 10.0663

>NTDB_id=408401 GPX85_RS06675 WP_158137756.1 624941..625591(-) (qstR) [Vibrio metschnikovii strain 07-2421]
MPKSSYARTIYYLTTDVNQSTPSRLQKAFHLLAIPIEKVEPEPLVQQYRHSKHKILLLDYQDHRAIRHRLGPLKLTTHYL
ETILFNVDKRLPTDLLISFGNLKGLFYQTDSAEQLSHGLAQIINGQNWLPRHVSNQLLHHFRYAFHEQHTKATLDLTVRE
IQILRCLQAQASNDDIAKNLFISELTVKSHLYQIYKKLAVKNRAQAISWANHHLFQ

Nucleotide


Download         Length: 651 bp        

>NTDB_id=408401 GPX85_RS06675 WP_158137756.1 624941..625591(-) (qstR) [Vibrio metschnikovii strain 07-2421]
ATGCCCAAATCGAGTTACGCGCGTACCATCTACTATCTGACCACAGACGTAAATCAATCGACTCCGAGTCGGTTACAAAA
AGCATTTCATCTACTCGCGATCCCTATCGAAAAAGTGGAGCCTGAACCGTTAGTACAACAATACCGACACAGTAAACACA
AGATACTGCTGCTCGATTATCAAGATCATCGCGCGATTCGTCATCGACTTGGTCCTTTAAAACTGACCACTCATTATCTT
GAGACGATTCTTTTTAATGTCGATAAACGACTACCGACCGATCTATTAATCAGCTTTGGGAATTTAAAGGGACTCTTTTA
TCAAACCGATAGTGCGGAGCAACTTTCCCATGGCTTGGCGCAGATCATTAATGGCCAAAATTGGTTGCCTCGTCATGTTT
CGAACCAATTACTGCATCATTTTCGTTACGCCTTTCATGAGCAACATACCAAAGCCACTCTCGATCTTACGGTTCGAGAA
ATACAGATTTTACGCTGTTTGCAAGCGCAAGCTTCCAACGATGATATTGCGAAGAACTTATTTATCAGCGAACTAACCGT
AAAATCTCATTTGTACCAAATTTATAAAAAGCTCGCGGTAAAAAACCGAGCTCAAGCGATATCTTGGGCCAATCACCATC
TTTTTCAGTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(156-210)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio cholerae strain A1552

60.93

99.537

0.606
  qstR Vibrio parahaemolyticus RIMD 2210633

46.512

99.537

0.463
  qstR Vibrio campbellii strain DS40M4

46.047

99.537

0.458

Multiple sequence alignment